Variant report

Variant	rs4944880
Chromosome Location	chr11:73819572-73819573
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73677358..73679937-chr11:73818176..73820385,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11236004	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11236006	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs11236008	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11236028	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11825568	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11825974	0.92[ASN][1000 genomes]
rs15763	0.93[JPT][hapmap]
rs1626521	0.83[CEU][hapmap];0.93[JPT][hapmap]
rs1685354	0.93[JPT][hapmap]
rs1790400	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1941820	0.81[CHB][hapmap]
rs2632723	0.93[JPT][hapmap]
rs2734827	0.93[JPT][hapmap]
rs2848557	0.88[CEU][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs530699	0.90[CHB][hapmap];0.93[JPT][hapmap]
rs542628	0.81[CHB][hapmap]
rs555964	0.88[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.81[EUR][1000 genomes]
rs562488	0.81[CHB][hapmap]
rs58006161	0.80[ASN][1000 genomes]
rs60647229	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs668514	0.93[JPT][hapmap]
rs699142	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72984831	0.87[ASN][1000 genomes]
rs72984885	0.85[ASN][1000 genomes]
rs72984886	0.85[ASN][1000 genomes]
rs7925988	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs826044	0.88[YRI][hapmap]
rs826054	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs826055	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs826057	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs826058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs866650	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs869616	0.83[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4944880	UCP2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73781800-73849200	Weak transcription	Stomach Mucosa	stomach
2	chr11:73782600-73823800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:73785600-73823600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:73794600-73823600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:73795200-73820600	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:73795200-73823800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:73801600-73823600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr11:73802000-73831800	Weak transcription	Pancreas	Pancrea
9	chr11:73802200-73880800	Weak transcription	Esophagus	oesophagus
10	chr11:73802400-73832000	Weak transcription	Fetal Heart	heart
11	chr11:73804000-73832400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:73804000-73880800	Weak transcription	Aorta	Aorta
13	chr11:73805000-73823600	Weak transcription	Colonic Mucosa	Colon
14	chr11:73808800-73823600	Weak transcription	Colon Smooth Muscle	Colon
15	chr11:73809800-73844400	Weak transcription	HMEC	breast
16	chr11:73809800-73847200	Weak transcription	HepG2	liver
17	chr11:73812000-73849000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:73812800-73820400	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:73814600-73823800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr11:73814600-73845400	Weak transcription	Psoas Muscle	Psoas
21	chr11:73814800-73823800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr11:73814800-73824800	Weak transcription	Fetal Brain Male	brain
23	chr11:73815000-73823800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:73815000-73824800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr11:73815400-73834200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr11:73816200-73822400	Strong transcription	HSMMtube	muscle
27	chr11:73816400-73820400	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr11:73816800-73840000	Weak transcription	Fetal Intestine Small	intestine
29	chr11:73816800-73845400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:73817000-73823000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr11:73817200-73823600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:73817200-73846800	Weak transcription	Spleen	Spleen
33	chr11:73817400-73821800	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr11:73817400-73823600	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr11:73817400-73823600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr11:73817400-73823600	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr11:73817400-73823600	Weak transcription	Brain Hippocampus Middle	brain
38	chr11:73817400-73823600	Weak transcription	Fetal Brain Female	brain
39	chr11:73817400-73823600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr11:73817400-73823800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr11:73817400-73823800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:73817400-73823800	Weak transcription	Ovary	ovary
43	chr11:73817400-73823800	Weak transcription	Rectal Smooth Muscle	rectum
44	chr11:73817400-73823800	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr11:73817400-73823800	Weak transcription	K562	blood
46	chr11:73817400-73824000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:73817400-73824000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:73817400-73826800	Weak transcription	Small Intestine	intestine
49	chr11:73817400-73828600	Weak transcription	Right Ventricle	heart
50	chr11:73817400-73845400	Weak transcription	NHDF-Ad	bronchial

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