Variant report

Variant	rs11825693
Chromosome Location	chr11:18834574-18834575
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11512067	0.90[ASN][1000 genomes]
rs1384642	0.83[CHB][hapmap]
rs4756970	0.90[ASN][1000 genomes]
rs55899426	0.90[ASN][1000 genomes]
rs56062517	0.90[ASN][1000 genomes]
rs56382615	0.90[ASN][1000 genomes]
rs60013221	0.90[ASN][1000 genomes]
rs60532851	0.90[ASN][1000 genomes]
rs6483531	0.90[ASN][1000 genomes]
rs7102774	0.90[ASN][1000 genomes]
rs7102779	0.90[ASN][1000 genomes]
rs7103161	0.90[ASN][1000 genomes]
rs7116498	0.90[ASN][1000 genomes]
rs7129128	0.92[JPT][hapmap]
rs72893636	0.90[ASN][1000 genomes]
rs7927784	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7930561	0.90[ASN][1000 genomes]
rs7939084	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	esv2758257	chr11:18818729-19082068	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2759806	chr11:18818729-19082068	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv428250	chr11:18818729-19082068	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11825693	HTATIP2	cis	cerebellum	SCAN
rs11825693	BEND7	trans	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18831200-18841000	Weak transcription	Fetal Intestine Small	intestine
2	chr11:18831800-18834800	Enhancers	Duodenum Mucosa	Duodenum
3	chr11:18834400-18834600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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