Variant report

Variant	rs11827064
Chromosome Location	chr11:68533096-68533097
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:68531984..68533882-chr11:68535711..68538006,2	MCF-7	breast:
2	chr11:68525747..68527279-chr11:68532229..68534346,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11820323	1.00[AMR][1000 genomes]
rs11824608	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428261	chr11:68522084-68705303	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68518800-68538400	Weak transcription	HSMMtube	muscle
2	chr11:68519000-68537800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr11:68519400-68538000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:68519400-68538000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:68519400-68540400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr11:68519400-68540600	Weak transcription	NHEK	skin
7	chr11:68519400-68540800	Weak transcription	HepG2	liver
8	chr11:68519400-68548000	Weak transcription	K562	blood
9	chr11:68519400-68548200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:68519400-68558800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr11:68519400-68574600	Weak transcription	HSMM	muscle
12	chr11:68519800-68539000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr11:68521200-68587000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr11:68521400-68561200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:68521400-68579400	Strong transcription	Duodenum Mucosa	Duodenum
16	chr11:68521400-68579600	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr11:68521400-68584800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr11:68521600-68536600	Strong transcription	Left Ventricle	heart
19	chr11:68521600-68541200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:68521600-68561200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:68521600-68575600	Strong transcription	Rectal Mucosa Donor 31	rectum
22	chr11:68521600-68584400	Strong transcription	Liver	Liver
23	chr11:68521800-68572800	Strong transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:68521800-68585600	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr11:68522000-68575600	Strong transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:68522600-68537800	Weak transcription	Brain Hippocampus Middle	brain
27	chr11:68522600-68541400	Strong transcription	Stomach Smooth Muscle	stomach
28	chr11:68522800-68538800	Weak transcription	Fetal Kidney	kidney
29	chr11:68522800-68539400	Weak transcription	Brain Germinal Matrix	brain
30	chr11:68522800-68540600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:68522800-68548600	Weak transcription	Brain Angular Gyrus	brain
32	chr11:68522800-68556200	Strong transcription	Fetal Intestine Small	intestine
33	chr11:68523200-68553000	Strong transcription	Colonic Mucosa	Colon
34	chr11:68523400-68534800	Strong transcription	Adipose Nuclei	Adipose
35	chr11:68523400-68553800	Strong transcription	Colon Smooth Muscle	Colon
36	chr11:68523600-68533200	Strong transcription	Dnd41	blood
37	chr11:68523600-68533400	Strong transcription	Rectal Smooth Muscle	rectum
38	chr11:68523600-68545400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr11:68523600-68555800	Strong transcription	Aorta	Aorta
40	chr11:68523800-68533200	Strong transcription	Gastric	stomach
41	chr11:68523800-68533600	Strong transcription	Lung	lung
42	chr11:68523800-68534800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr11:68523800-68535400	Strong transcription	Pancreas	Pancrea
44	chr11:68523800-68538200	Weak transcription	Stomach Mucosa	stomach
45	chr11:68523800-68544800	Strong transcription	Ovary	ovary
46	chr11:68523800-68545800	Strong transcription	Spleen	Spleen
47	chr11:68523800-68554600	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr11:68523800-68572800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:68523800-68584000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr11:68524400-68533800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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