Variant report

Variant	rs11827650
Chromosome Location	chr11:73029246-73029247
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73022099..73024421-chr11:73029246..73031381,2	K562	blood:
2	chr11:73028376..73030954-chr11:73032698..73034270,2	K562	blood:
3	chr11:73004894..73006465-chr11:73028273..73031110,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110237	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10898917	0.96[ASN][1000 genomes]
rs11235729	0.82[ASN][1000 genomes]
rs11820037	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11820929	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11821094	0.96[ASN][1000 genomes]
rs11823923	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824050	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824614	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12275766	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282282	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293998	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294659	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894076	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2027760	0.96[ASN][1000 genomes]
rs2027761	0.92[ASN][1000 genomes]
rs2027763	0.96[ASN][1000 genomes]
rs2298807	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3741149	0.96[ASN][1000 genomes]
rs55771351	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56363880	0.96[ASN][1000 genomes]
rs56397594	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57592318	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57893472	0.96[ASN][1000 genomes]
rs58364325	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60700454	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61037777	0.96[ASN][1000 genomes]
rs61131329	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61705659	0.92[ASN][1000 genomes]
rs6592519	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592520	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592521	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102787	0.96[ASN][1000 genomes]
rs7105681	0.96[ASN][1000 genomes]
rs7105705	0.96[ASN][1000 genomes]
rs7107905	0.96[ASN][1000 genomes]
rs7115605	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7122560	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7125978	0.96[ASN][1000 genomes]
rs7131383	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs725103	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7342205	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7930880	0.96[ASN][1000 genomes]
rs7933754	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936102	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944099	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949364	0.96[ASN][1000 genomes]
rs876480	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947837	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv520665	chr11:72999221-73061856	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv825993	chr11:73029209-73091929	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73023000-73029600	Flanking Active TSS	Stomach Smooth Muscle	stomach
2	chr11:73024000-73029400	Enhancers	Brain Angular Gyrus	brain
3	chr11:73024000-73030000	Enhancers	Lung	lung
4	chr11:73024400-73029600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr11:73024400-73037000	Enhancers	Placenta	Placenta
6	chr11:73024800-73037000	Genic enhancers	Fetal Intestine Small	intestine
7	chr11:73025000-73029400	Enhancers	Fetal Lung	lung
8	chr11:73025000-73029600	Enhancers	Fetal Brain Male	brain
9	chr11:73025000-73029800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:73025200-73029800	Enhancers	Primary hematopoietic stem cells	blood
11	chr11:73025200-73030000	Enhancers	Right Atrium	heart
12	chr11:73025200-73031200	Enhancers	Brain Anterior Caudate	brain
13	chr11:73025400-73029600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr11:73025400-73037200	Enhancers	Left Ventricle	heart
15	chr11:73025600-73029400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr11:73025600-73031200	Genic enhancers	Fetal Intestine Large	intestine
17	chr11:73025600-73033000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:73025600-73033400	Weak transcription	Liver	Liver
19	chr11:73025800-73031400	Enhancers	Brain Substantia Nigra	brain
20	chr11:73025800-73038400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:73026000-73030200	Weak transcription	Thymus	Thymus
22	chr11:73026000-73030400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:73026000-73031800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:73026000-73032400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:73026000-73032800	Weak transcription	A549	lung
26	chr11:73026000-73033000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr11:73026000-73034400	Weak transcription	Hela-S3	cervix
28	chr11:73026200-73030600	Enhancers	NHDF-Ad	bronchial
29	chr11:73026200-73031000	Enhancers	Brain Cingulate Gyrus	brain
30	chr11:73026200-73031800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr11:73026200-73031800	Genic enhancers	Fetal Muscle Leg	muscle
32	chr11:73026200-73032000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr11:73026200-73032000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr11:73026400-73029600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:73026400-73029800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr11:73026400-73031600	Enhancers	Brain Hippocampus Middle	brain
37	chr11:73026400-73031800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr11:73026400-73036800	Enhancers	Fetal Heart	heart
39	chr11:73026600-73029800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr11:73026600-73031200	Weak transcription	HMEC	breast
41	chr11:73026600-73031400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr11:73026600-73032000	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr11:73026600-73032000	Weak transcription	Small Intestine	intestine
44	chr11:73026600-73039600	Genic enhancers	Fetal Stomach	stomach
45	chr11:73026800-73029800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:73026800-73030600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:73026800-73031000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:73026800-73031400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:73026800-73032400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:73027400-73029600	Weak transcription	HSMM	muscle

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