Variant report

Variant	rs61705659
Chromosome Location	chr11:73012101-73012102
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:73011766..73013330-chr11:73026654..73028926,2	MCF-7	breast:
2	chr11:73006048..73010215-chr11:73011850..73015047,4	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10898917	0.96[ASN][1000 genomes]
rs11820037	0.92[ASN][1000 genomes]
rs11820929	0.92[ASN][1000 genomes]
rs11821094	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11823923	0.92[ASN][1000 genomes]
rs11824050	0.92[ASN][1000 genomes]
rs11824614	0.92[ASN][1000 genomes]
rs11827650	0.92[ASN][1000 genomes]
rs12275766	0.92[ASN][1000 genomes]
rs12282282	0.92[ASN][1000 genomes]
rs12293998	0.92[ASN][1000 genomes]
rs12294659	0.92[ASN][1000 genomes]
rs1894076	0.92[ASN][1000 genomes]
rs2027760	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2027761	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2027763	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2298807	0.92[ASN][1000 genomes]
rs3741149	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3741151	0.83[EUR][1000 genomes]
rs3741152	0.96[EUR][1000 genomes]
rs55771351	0.92[ASN][1000 genomes]
rs56363880	0.89[ASN][1000 genomes]
rs56397594	0.89[ASN][1000 genomes]
rs57592318	0.92[ASN][1000 genomes]
rs57893472	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58364325	0.92[ASN][1000 genomes]
rs60700454	0.92[ASN][1000 genomes]
rs61037777	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61131329	0.92[ASN][1000 genomes]
rs6592519	0.92[ASN][1000 genomes]
rs6592520	0.92[ASN][1000 genomes]
rs6592521	0.92[ASN][1000 genomes]
rs7102787	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7105681	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7105705	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7107905	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7115605	0.92[ASN][1000 genomes]
rs7115806	0.92[EUR][1000 genomes]
rs7125949	0.96[EUR][1000 genomes]
rs7125978	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7129663	0.83[EUR][1000 genomes]
rs7131383	0.92[ASN][1000 genomes]
rs725103	0.92[ASN][1000 genomes]
rs7342205	0.92[ASN][1000 genomes]
rs7930880	0.96[ASN][1000 genomes]
rs7933754	0.92[ASN][1000 genomes]
rs7936102	0.92[ASN][1000 genomes]
rs7944099	0.92[ASN][1000 genomes]
rs7947515	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7949364	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs876480	0.92[ASN][1000 genomes]
rs947837	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv520665	chr11:72999221-73061856	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61705659	ARHGEF17	cis	Whole Blood	GTEx

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73000800-73018000	Weak transcription	Pancreas	Pancrea
2	chr11:73006600-73018000	Weak transcription	Right Atrium	heart
3	chr11:73006800-73017600	Weak transcription	Fetal Heart	heart
4	chr11:73007000-73017800	Weak transcription	Osteobl	bone
5	chr11:73008200-73017800	Weak transcription	Right Ventricle	heart
6	chr11:73009000-73012200	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr11:73009400-73017200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr11:73009400-73017400	Weak transcription	A549	lung
9	chr11:73010200-73012200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr11:73010200-73012200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr11:73010200-73017400	Weak transcription	Fetal Intestine Small	intestine
12	chr11:73011200-73016200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:73011400-73012200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr11:73011400-73012200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr11:73011400-73012400	Enhancers	Fetal Muscle Leg	muscle
16	chr11:73011600-73012200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:73011600-73012200	Enhancers	Fetal Intestine Large	intestine
18	chr11:73011600-73012400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:73011600-73012400	Enhancers	HSMMtube	muscle
20	chr11:73011800-73012200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:73011800-73012200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr11:73011800-73012200	Enhancers	Primary hematopoietic stem cells	blood
23	chr11:73011800-73012200	Enhancers	Fetal Muscle Trunk	muscle
24	chr11:73011800-73012200	Enhancers	Placenta	Placenta
25	chr11:73011800-73017400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:73011800-73017600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:73012000-73012200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:73012000-73012400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
29	chr11:73012000-73017000	Weak transcription	Spleen	Spleen
30	chr11:73012000-73017200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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