Variant report

Variant	rs11827795
Chromosome Location	chr11:3976770-3976771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:3972776..3975865-chr11:3976108..3980315,4	K562	blood:
2	chr11:3975898..3977886-chr11:3979851..3982508,2	K562	blood:

Variant related genes	Relation type
ENSG00000255232	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10500591	0.88[YRI][hapmap]
rs11821399	1.00[AMR][1000 genomes]
rs11823158	0.85[AMR][1000 genomes]
rs11827535	0.85[AMR][1000 genomes]
rs11827750	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16929611	0.88[YRI][hapmap]
rs2167562	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2167563	0.88[YRI][hapmap]
rs2412336	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57282641	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57292382	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57365434	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58151848	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58461583	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59108256	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59178256	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59580400	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59842937	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59973839	0.85[AMR][1000 genomes]
rs60110100	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60462758	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61225070	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61355819	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61589687	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6578420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6578421	1.00[EUR][1000 genomes]
rs6578423	0.88[YRI][hapmap]
rs6578435	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66596383	0.85[AFR][1000 genomes]
rs7109227	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7114373	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7117657	0.82[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122796	1.00[AMR][1000 genomes]
rs7123124	0.83[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128522	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72555753	1.00[EUR][1000 genomes]
rs7924332	1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7926343	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7931280	0.88[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7938706	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7938862	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7939086	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7939090	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7940292	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7940511	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7941743	0.89[YRI][hapmap]
rs7942028	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7942271	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943217	0.89[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7949898	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs894456	0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049560	chr11:3678259-3980746	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv540907	chr11:3678259-3980746	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1052744	chr11:3739162-4017601	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1047025	chr11:3750969-4017601	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1046065	chr11:3808818-4049150	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv540909	chr11:3808818-4049150	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3961200-4002000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:3968200-3980200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:3969000-3980400	Weak transcription	NHLF	lung
4	chr11:3969400-3976800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:3969400-3980000	Weak transcription	Liver	Liver
6	chr11:3969600-3977800	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr11:3970200-3977200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr11:3970600-3978000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr11:3970800-3977000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr11:3970800-3977800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr11:3970800-3988600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr11:3971400-3988400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr11:3972800-3979400	Weak transcription	HepG2	liver
14	chr11:3972800-3979600	Weak transcription	A549	lung
15	chr11:3972800-3988800	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:3973000-3977400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:3973000-3977800	Enhancers	Primary T cells from cord blood	blood
18	chr11:3973000-3978000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr11:3973000-3988600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr11:3973200-3981000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr11:3973200-3982400	Weak transcription	Primary B cells from cord blood	blood
22	chr11:3973200-3984800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:3973200-3993200	Weak transcription	Colon Smooth Muscle	Colon
24	chr11:3973200-4008400	Weak transcription	Fetal Lung	lung
25	chr11:3973600-3977400	Enhancers	Primary B cells from peripheral blood	blood
26	chr11:3973600-3993800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:3973800-3979600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:3974000-3977400	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr11:3974200-3982200	Weak transcription	Brain Anterior Caudate	brain
30	chr11:3974400-3977800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr11:3974400-3980400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr11:3974400-3983400	Weak transcription	Small Intestine	intestine
33	chr11:3974600-3977000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:3974600-3977400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:3974600-3977400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr11:3974600-3977600	Enhancers	HMEC	breast
37	chr11:3974800-3977000	Enhancers	Placenta	Placenta
38	chr11:3974800-3977800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
39	chr11:3974800-3979600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:3974800-3988200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr11:3974800-3988800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr11:3975000-3977400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
43	chr11:3975000-4006000	Weak transcription	Right Ventricle	heart
44	chr11:3975200-3977600	Enhancers	NHEK	skin
45	chr11:3975400-3977600	Enhancers	Fetal Thymus	thymus
46	chr11:3975400-3979800	Weak transcription	Psoas Muscle	Psoas
47	chr11:3975600-3988600	Weak transcription	Dnd41	blood
48	chr11:3975600-3988800	Weak transcription	Aorta	Aorta
49	chr11:3975800-3978400	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr11:3975800-3979200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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