Variant report

Variant	rs16929611
Chromosome Location	chr11:3963470-3963471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:3963150..3965730-chr11:3971154..3972718,2	K562	blood:
2	chr11:3959785..3962625-chr11:3963394..3965455,2	K562	blood:

Extended variants
information (count: 97 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10430939	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs10458900	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs10500591	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10500592	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[ASN][1000 genomes]
rs11030251	0.93[ASN][1000 genomes]
rs11030286	0.96[ASN][1000 genomes]
rs11030326	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11030327	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11030366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11030417	0.96[ASN][1000 genomes]
rs11030418	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.99[ASN][1000 genomes]
rs11030453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs11030478	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.97[ASN][1000 genomes]
rs11030479	0.97[ASN][1000 genomes]
rs11030481	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs11030484	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs11030485	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs11030486	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.97[ASN][1000 genomes]
rs11030697	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[ASN][1000 genomes]
rs11030796	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[ASN][1000 genomes]
rs11525342	0.87[ASN][1000 genomes]
rs11529865	0.87[ASN][1000 genomes]
rs11827795	0.88[YRI][hapmap]
rs12222250	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12224469	0.95[ASN][1000 genomes]
rs1372803	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs16929410	0.81[CHB][hapmap]
rs16929438	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs16929467	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs16929477	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs16929480	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs16929488	1.00[CEU][hapmap];0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs16929492	1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[ASN][1000 genomes]
rs16929529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs16929531	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs16929538	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.97[ASN][1000 genomes]
rs16929540	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs16929542	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[ASN][1000 genomes]
rs16929546	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.97[ASN][1000 genomes]
rs16929616	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs16929653	0.94[CHB][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs1822286	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[ASN][1000 genomes]
rs1899478	0.82[ASN][1000 genomes]
rs2167562	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs2167563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3750994	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs4910878	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs55679086	0.97[ASN][1000 genomes]
rs55978228	0.97[ASN][1000 genomes]
rs56126231	0.99[ASN][1000 genomes]
rs56140937	0.81[ASN][1000 genomes]
rs57282641	0.82[AFR][1000 genomes]
rs59195871	0.93[ASN][1000 genomes]
rs59242983	0.84[ASN][1000 genomes]
rs59580400	0.85[AFR][1000 genomes]
rs60462758	0.82[AFR][1000 genomes]
rs60930198	0.87[ASN][1000 genomes]
rs61355819	0.82[AFR][1000 genomes]
rs61897162	0.92[ASN][1000 genomes]
rs61897163	0.96[ASN][1000 genomes]
rs61897164	0.96[ASN][1000 genomes]
rs61897166	1.00[ASN][1000 genomes]
rs61897167	0.97[ASN][1000 genomes]
rs61897170	0.97[ASN][1000 genomes]
rs61897171	0.97[ASN][1000 genomes]
rs61897194	0.97[ASN][1000 genomes]
rs61897195	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs61897201	0.97[ASN][1000 genomes]
rs61897202	0.97[ASN][1000 genomes]
rs61897203	0.84[ASN][1000 genomes]
rs61897234	0.86[ASN][1000 genomes]
rs61897237	0.85[ASN][1000 genomes]
rs61897238	0.84[ASN][1000 genomes]
rs61897254	0.81[ASN][1000 genomes]
rs6578423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6578435	0.90[YRI][hapmap]
rs723779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72847181	0.80[ASN][1000 genomes]
rs72851736	0.97[ASN][1000 genomes]
rs750526	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7924332	0.89[YRI][hapmap]
rs7928117	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7934581	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[ASN][1000 genomes]
rs7938706	0.90[YRI][hapmap]
rs7939086	0.88[YRI][hapmap]
rs7941743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7943217	0.80[YRI][hapmap]
rs894454	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs894456	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049560	chr11:3678259-3980746	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv540907	chr11:3678259-3980746	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1052744	chr11:3739162-4017601	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1047025	chr11:3750969-4017601	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1046065	chr11:3808818-4049150	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv540909	chr11:3808818-4049150	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv869701	chr11:3879297-3973762	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv896895	chr11:3942001-3972236	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3950400-3972200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:3951200-3965400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:3951200-3967600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:3951400-3963600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:3954000-3963800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr11:3956200-3964000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:3958800-3968000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr11:3959600-3963800	Weak transcription	Fetal Lung	lung
9	chr11:3960000-3967600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr11:3960200-3967600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:3961000-3964200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:3961200-3963600	Weak transcription	Stomach Mucosa	stomach
13	chr11:3961200-3964600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:3961200-4002000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:3961400-3963600	Enhancers	Primary T cells from cord blood	blood
16	chr11:3961400-3964400	Enhancers	Right Atrium	heart
17	chr11:3961400-3964800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:3961400-3965200	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr11:3961400-3968600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:3961400-3968600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr11:3961400-3969200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:3961600-3963600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:3961600-3963800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr11:3961600-3963800	Weak transcription	HMEC	breast
25	chr11:3961600-3966400	Enhancers	NHDF-Ad	bronchial
26	chr11:3961600-3967600	Weak transcription	Brain Angular Gyrus	brain
27	chr11:3961600-3967800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:3961600-3968000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:3961600-3968400	Weak transcription	NHEK	skin
30	chr11:3961600-3975200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:3961800-3963600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:3961800-3963600	Enhancers	Dnd41	blood
33	chr11:3961800-3963800	Enhancers	Primary T helper cells fromperipheralblood	blood
34	chr11:3961800-3964000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:3961800-3965600	Weak transcription	NHLF	lung
36	chr11:3961800-3968000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr11:3962000-3963600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:3962000-3963800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr11:3962000-3965200	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr11:3962000-3971800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr11:3962000-3973400	Weak transcription	Ovary	ovary
42	chr11:3962400-3964000	Enhancers	Thymus	Thymus
43	chr11:3962400-3968000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr11:3962400-3968400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr11:3962600-3968200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:3963000-3963600	Enhancers	HepG2	liver
47	chr11:3963000-3964000	Enhancers	Primary T cells fromperipheralblood	blood
48	chr11:3963000-3964800	Enhancers	Right Ventricle	heart
49	chr11:3963000-3966400	Enhancers	Psoas Muscle	Psoas
50	chr11:3963000-3967000	Enhancers	Fetal Thymus	thymus

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