The 2.0 version of rSNPBase

Variant report

Variant rs61897164
Chromosome Location chr11:3952787-3952788
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:3938400-3956400 Weak transcription Dnd41 blood
2 chr11:3939000-3956000 Weak transcription Esophagus oesophagus
3 chr11:3943400-3954800 Weak transcription Primary hematopoietic stem cells blood
4 chr11:3943800-3953200 Weak transcription Monocytes-CD14+_RO01746 blood
5 chr11:3948200-3955800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
6 chr11:3948200-3955800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
7 chr11:3948400-3952800 Weak transcription Placenta Amnion Placenta Amnion
8 chr11:3948400-3960400 Weak transcription NHEK skin
9 chr11:3948600-3955600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr11:3948800-3954400 Weak transcription Primary T killer memory cells from peripheral blood blood
11 chr11:3948800-3960800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
12 chr11:3949000-3961400 Weak transcription Right Atrium heart
13 chr11:3949200-3954200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
14 chr11:3949400-3959400 Weak transcription Fetal Lung lung
15 chr11:3949600-3953600 Strong transcription Primary T cells from cord blood blood
16 chr11:3950000-3953000 Enhancers Primary neutrophils fromperipheralblood blood
17 chr11:3950000-3957600 Weak transcription GM12878-XiMat blood
18 chr11:3950200-3953600 Enhancers Psoas Muscle Psoas
19 chr11:3950400-3972200 Weak transcription Fetal Muscle Trunk muscle
20 chr11:3950600-3953000 Strong transcription Primary B cells from cord blood blood
21 chr11:3950800-3956200 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr11:3951000-3954600 Weak transcription Duodenum Mucosa Duodenum
23 chr11:3951000-3955600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
24 chr11:3951000-3957400 Enhancers Skeletal Muscle Female skeletal muscle
25 chr11:3951000-3960600 Weak transcription Stomach Mucosa stomach
26 chr11:3951200-3952800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr11:3951200-3953600 Strong transcription Primary hematopoietic stem cells short term culture blood
28 chr11:3951200-3954800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr11:3951200-3965400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
30 chr11:3951200-3967600 Weak transcription Brain Inferior Temporal Lobe brain
31 chr11:3951400-3952800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
32 chr11:3951400-3953000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr11:3951400-3953200 Enhancers Primary T killer naive cells fromperipheralblood blood
34 chr11:3951400-3953200 Enhancers Skeletal Muscle Male skeletal muscle
35 chr11:3951400-3954000 Weak transcription Primary monocytes fromperipheralblood blood
36 chr11:3951400-3955000 Weak transcription Primary T regulatory cells fromperipheralblood blood
37 chr11:3951400-3955600 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr11:3951400-3955800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr11:3951400-3955800 Weak transcription Fetal Stomach stomach
40 chr11:3951400-3956000 Weak transcription Aorta Aorta
41 chr11:3951400-3956000 Weak transcription Gastric stomach
42 chr11:3951400-3956400 Weak transcription Rectal Mucosa Donor 29 rectum
43 chr11:3951400-3959000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr11:3951400-3959200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
45 chr11:3951400-3959800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
46 chr11:3951400-3961400 Weak transcription Rectal Mucosa Donor 31 rectum
47 chr11:3951400-3963400 Weak transcription A549 lung
48 chr11:3951400-3963600 Weak transcription Fetal Adrenal Gland Adrenal Gland
49 chr11:3951600-3953000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
50 chr11:3951600-3953200 Weak transcription Primary T helper cells fromperipheralblood blood

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Last update: Aug 31, 2015