The 2.0 version of rSNPBase

Variant report

Variant rs55978228
Chromosome Location chr11:4000196-4000197
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:3961200-4002000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
2 chr11:3973200-4008400 Weak transcription Fetal Lung lung
3 chr11:3975000-4006000 Weak transcription Right Ventricle heart
4 chr11:3982600-4004400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr11:3982600-4005600 Weak transcription Placenta Amnion Placenta Amnion
6 chr11:3982600-4006000 Weak transcription Left Ventricle heart
7 chr11:3984000-4010400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
8 chr11:3985000-4002400 Weak transcription NHDF-Ad bronchial
9 chr11:3985800-4001200 Weak transcription Small Intestine intestine
10 chr11:3986000-4008000 Weak transcription HepG2 liver
11 chr11:3987000-4010400 Weak transcription Fetal Intestine Small intestine
12 chr11:3987200-4001600 Weak transcription Gastric stomach
13 chr11:3988000-4002400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
14 chr11:3988200-4006200 Weak transcription Pancreas Pancrea
15 chr11:3989400-4010600 Weak transcription Spleen Spleen
16 chr11:3989400-4031000 Weak transcription Aorta Aorta
17 chr11:3989800-4002400 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr11:3989800-4006000 Weak transcription Rectal Smooth Muscle rectum
19 chr11:3989800-4006200 Weak transcription Fetal Muscle Leg muscle
20 chr11:3989800-4006600 Weak transcription Liver Liver
21 chr11:3990000-4002000 Weak transcription Rectal Mucosa Donor 31 rectum
22 chr11:3990400-4006000 Weak transcription Stomach Smooth Muscle stomach
23 chr11:3990600-4000600 Weak transcription Primary B cells from cord blood blood
24 chr11:3991200-4000800 Weak transcription Ovary ovary
25 chr11:3991200-4002400 Weak transcription Skeletal Muscle Female skeletal muscle
26 chr11:3991200-4004400 Weak transcription Primary B cells from peripheral blood blood
27 chr11:3991200-4006200 Weak transcription Adipose Nuclei Adipose
28 chr11:3991400-4003000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr11:3991600-4000400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
30 chr11:3991600-4002800 Weak transcription Dnd41 blood
31 chr11:3991600-4003800 Weak transcription Primary hematopoietic stem cells blood
32 chr11:3991600-4004400 Weak transcription GM12878-XiMat blood
33 chr11:3993200-4003800 Weak transcription Primary hematopoietic stem cells short term culture blood
34 chr11:3993400-4000400 Weak transcription Primary T cells from cord blood blood
35 chr11:3993800-4003600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
36 chr11:3994400-4016600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr11:3994600-4002000 Weak transcription Breast Myoepithelial Primary Cells Breast
38 chr11:3994600-4002400 Weak transcription Esophagus oesophagus
39 chr11:3994600-4002400 Weak transcription Thymus Thymus
40 chr11:3995200-4000200 Weak transcription Fetal Thymus thymus
41 chr11:3995400-4004200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr11:3995400-4005800 Weak transcription Fetal Stomach stomach
43 chr11:3996800-4002200 Weak transcription Psoas Muscle Psoas
44 chr11:3997000-4004800 Weak transcription Monocytes-CD14+_RO01746 blood
45 chr11:3997200-4004800 Weak transcription Primary monocytes fromperipheralblood blood
46 chr11:3998200-4001000 Enhancers Primary T helper cells fromperipheralblood blood
47 chr11:3998600-4008800 Enhancers Primary T helper cells PMA-I stimulated --
48 chr11:3998800-4001200 Enhancers Primary T helper naive cells fromperipheralblood blood
49 chr11:3999200-4000200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
50 chr11:3999200-4001000 Enhancers Primary T cells fromperipheralblood blood

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Last update: Aug 31, 2015