Variant report

Variant	rs61897206
Chromosome Location	chr11:4021111-4021112
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10458900	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10500592	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11030478	0.81[ASN][1000 genomes]
rs11030479	0.81[ASN][1000 genomes]
rs11030481	0.81[ASN][1000 genomes]
rs11030484	0.81[ASN][1000 genomes]
rs11030485	0.81[ASN][1000 genomes]
rs11030486	0.81[ASN][1000 genomes]
rs11030697	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11030796	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11525342	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11529865	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1372803	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16929438	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16929467	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16929477	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16929480	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16929488	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16929492	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16929529	0.81[ASN][1000 genomes]
rs16929531	0.81[ASN][1000 genomes]
rs16929538	0.81[ASN][1000 genomes]
rs16929546	0.81[ASN][1000 genomes]
rs1822286	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1899478	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3750994	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55679086	0.81[ASN][1000 genomes]
rs55978228	0.81[ASN][1000 genomes]
rs56140937	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59242983	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61897167	0.81[ASN][1000 genomes]
rs61897202	0.81[ASN][1000 genomes]
rs61897234	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61897237	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61897238	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61897254	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72851736	0.81[ASN][1000 genomes]
rs7934581	0.83[ASN][1000 genomes]
rs894454	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046065	chr11:3808818-4049150	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv540909	chr11:3808818-4049150	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv896896	chr11:4010409-4185595	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1042719	chr11:4017541-4101609	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3989400-4031000	Weak transcription	Aorta	Aorta
2	chr11:4006800-4022600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr11:4011800-4027600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:4017400-4041400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:4017600-4043400	Weak transcription	Primary B cells from cord blood	blood
6	chr11:4018000-4023000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr11:4018200-4027000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr11:4018200-4027200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr11:4018400-4027000	Weak transcription	Primary T cells from cord blood	blood
10	chr11:4018800-4022400	Weak transcription	Liver	Liver
11	chr11:4018800-4027200	Weak transcription	Psoas Muscle	Psoas
12	chr11:4019400-4027000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:4020400-4021200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:4020600-4027000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr11:4020800-4027600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr11:4020800-4037600	Weak transcription	Pancreas	Pancrea
17	chr11:4020800-4045000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr11:4021000-4032200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:4021000-4043600	Weak transcription	Thymus	Thymus
20	chr11:4021000-4044200	Weak transcription	Fetal Thymus	thymus
21	chr11:4021000-4044400	Weak transcription	Dnd41	blood

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