Variant report

Variant	rs61897234
Chromosome Location	chr11:4028743-4028744
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10430939	0.83[ASN][1000 genomes]
rs10458900	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10500591	0.85[ASN][1000 genomes]
rs10500592	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10500593	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs11030251	0.85[ASN][1000 genomes]
rs11030286	0.85[ASN][1000 genomes]
rs11030326	1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11030327	0.86[ASN][1000 genomes]
rs11030366	0.83[ASN][1000 genomes]
rs11030417	0.85[ASN][1000 genomes]
rs11030418	0.88[ASN][1000 genomes]
rs11030453	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11030478	0.89[ASN][1000 genomes]
rs11030479	0.89[ASN][1000 genomes]
rs11030481	0.89[ASN][1000 genomes]
rs11030484	0.89[ASN][1000 genomes]
rs11030485	0.89[ASN][1000 genomes]
rs11030486	0.89[ASN][1000 genomes]
rs11030697	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11030796	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11525342	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11529865	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12222250	0.85[ASN][1000 genomes]
rs12224469	0.82[ASN][1000 genomes]
rs1372803	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929410	0.88[ASN][1000 genomes]
rs16929438	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16929467	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16929477	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929480	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929488	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16929492	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16929529	0.89[ASN][1000 genomes]
rs16929531	0.89[ASN][1000 genomes]
rs16929538	0.89[ASN][1000 genomes]
rs16929540	0.84[ASN][1000 genomes]
rs16929542	0.86[ASN][1000 genomes]
rs16929546	0.89[ASN][1000 genomes]
rs16929611	0.86[ASN][1000 genomes]
rs16929616	0.85[ASN][1000 genomes]
rs1822286	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1899478	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2167563	0.85[ASN][1000 genomes]
rs3750994	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4910878	0.80[EUR][1000 genomes]
rs55679086	0.89[ASN][1000 genomes]
rs55978228	0.89[ASN][1000 genomes]
rs56126231	0.85[ASN][1000 genomes]
rs56140937	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59195871	0.83[ASN][1000 genomes]
rs59242983	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61897162	0.84[ASN][1000 genomes]
rs61897163	0.85[ASN][1000 genomes]
rs61897164	0.85[ASN][1000 genomes]
rs61897166	0.86[ASN][1000 genomes]
rs61897167	0.84[ASN][1000 genomes]
rs61897170	0.86[ASN][1000 genomes]
rs61897171	0.86[ASN][1000 genomes]
rs61897194	0.86[ASN][1000 genomes]
rs61897195	0.85[ASN][1000 genomes]
rs61897201	1.00[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs61897202	0.89[ASN][1000 genomes]
rs61897206	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61897237	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61897238	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61897254	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6578423	0.86[ASN][1000 genomes]
rs723779	0.83[ASN][1000 genomes]
rs72851736	0.89[ASN][1000 genomes]
rs750526	0.85[ASN][1000 genomes]
rs7934581	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7941743	0.86[ASN][1000 genomes]
rs894454	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046065	chr11:3808818-4049150	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv540909	chr11:3808818-4049150	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv896896	chr11:4010409-4185595	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1042719	chr11:4017541-4101609	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3989400-4031000	Weak transcription	Aorta	Aorta
2	chr11:4017400-4041400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:4017600-4043400	Weak transcription	Primary B cells from cord blood	blood
4	chr11:4020800-4037600	Weak transcription	Pancreas	Pancrea
5	chr11:4020800-4045000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr11:4021000-4032200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:4021000-4043600	Weak transcription	Thymus	Thymus
8	chr11:4021000-4044200	Weak transcription	Fetal Thymus	thymus
9	chr11:4021000-4044400	Weak transcription	Dnd41	blood
10	chr11:4027000-4028800	Enhancers	Primary T cells from cord blood	blood
11	chr11:4027000-4028800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:4027000-4029200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr11:4027000-4029200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr11:4027000-4029200	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr11:4027000-4029600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr11:4027000-4030000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr11:4027200-4029000	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr11:4027200-4029200	Enhancers	Primary T cells fromperipheralblood	blood
19	chr11:4027200-4029200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:4027200-4029200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr11:4027200-4029200	Enhancers	Psoas Muscle	Psoas
22	chr11:4027200-4030000	Enhancers	Fetal Muscle Leg	muscle
23	chr11:4027600-4029000	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr11:4027800-4029200	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr11:4028400-4028800	Enhancers	HSMMtube	muscle
26	chr11:4028400-4029800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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