Variant report

Variant	rs61897171
Chromosome Location	chr11:3968644-3968645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10430939	0.91[ASN][1000 genomes]
rs10458900	0.81[ASN][1000 genomes]
rs10500591	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11030251	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11030286	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11030326	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs11030327	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs11030366	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11030417	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11030418	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11030453	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11030478	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11030479	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11030481	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11030484	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11030485	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11030486	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11030697	0.87[ASN][1000 genomes]
rs11030796	0.82[ASN][1000 genomes]
rs11525342	0.87[ASN][1000 genomes]
rs11529865	0.87[ASN][1000 genomes]
rs12222250	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12224469	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1372803	0.85[ASN][1000 genomes]
rs16929438	0.81[ASN][1000 genomes]
rs16929467	0.81[ASN][1000 genomes]
rs16929477	0.85[ASN][1000 genomes]
rs16929480	0.85[ASN][1000 genomes]
rs16929488	0.85[ASN][1000 genomes]
rs16929492	0.87[ASN][1000 genomes]
rs16929529	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16929531	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16929538	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16929540	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16929542	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16929546	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16929611	0.97[ASN][1000 genomes]
rs16929616	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16929653	0.87[ASN][1000 genomes]
rs1822286	0.83[ASN][1000 genomes]
rs1899478	0.82[ASN][1000 genomes]
rs2167563	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3750994	0.81[ASN][1000 genomes]
rs55679086	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55978228	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56126231	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56140937	0.81[ASN][1000 genomes]
rs59195871	0.91[ASN][1000 genomes]
rs59242983	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60930198	0.87[ASN][1000 genomes]
rs61897162	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs61897163	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61897164	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61897166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897167	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61897170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897194	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897195	0.99[ASN][1000 genomes]
rs61897201	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61897202	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61897203	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61897234	0.86[ASN][1000 genomes]
rs61897237	0.85[ASN][1000 genomes]
rs61897238	0.83[ASN][1000 genomes]
rs61897254	0.81[ASN][1000 genomes]
rs6578423	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723779	0.91[ASN][1000 genomes]
rs72847181	0.80[ASN][1000 genomes]
rs72851736	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs750526	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7941743	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs894454	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049560	chr11:3678259-3980746	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv540907	chr11:3678259-3980746	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1052744	chr11:3739162-4017601	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1047025	chr11:3750969-4017601	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1046065	chr11:3808818-4049150	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv540909	chr11:3808818-4049150	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv869701	chr11:3879297-3973762	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv896895	chr11:3942001-3972236	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3950400-3972200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:3961200-4002000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:3961400-3969200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:3961600-3975200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:3962000-3971800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:3962000-3973400	Weak transcription	Ovary	ovary
7	chr11:3963000-3973200	Enhancers	Primary B cells from peripheral blood	blood
8	chr11:3963400-3969400	Enhancers	Adipose Nuclei	Adipose
9	chr11:3963400-3969400	Enhancers	Left Ventricle	heart
10	chr11:3964400-3971600	Weak transcription	A549	lung
11	chr11:3964400-3972000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:3964400-3972400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr11:3964600-3970000	Weak transcription	K562	blood
14	chr11:3965200-3969400	Enhancers	Right Ventricle	heart
15	chr11:3965400-3970200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:3965600-3969000	Enhancers	Small Intestine	intestine
17	chr11:3965800-3970400	Enhancers	Colon Smooth Muscle	Colon
18	chr11:3965800-3972000	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr11:3966000-3968800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:3966000-3972200	Weak transcription	Pancreas	Pancrea
21	chr11:3966800-3969000	Enhancers	Right Atrium	heart
22	chr11:3966800-3969400	Enhancers	Psoas Muscle	Psoas
23	chr11:3967000-3969400	Enhancers	Rectal Smooth Muscle	rectum
24	chr11:3967000-3972600	Weak transcription	Fetal Intestine Small	intestine
25	chr11:3967200-3968800	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr11:3967200-3969200	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr11:3967200-3969400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:3967200-3969400	Enhancers	Rectal Mucosa Donor 31	rectum
29	chr11:3967200-3969600	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr11:3967200-3970800	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr11:3967400-3969200	Enhancers	Duodenum Mucosa	Duodenum
32	chr11:3967400-3969200	Enhancers	Fetal Stomach	stomach
33	chr11:3967400-3971200	Flanking Active TSS	Primary T cells from cord blood	blood
34	chr11:3967400-3971400	Enhancers	Fetal Heart	heart
35	chr11:3967600-3968800	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr11:3967600-3969000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:3967600-3969000	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr11:3967600-3969000	Enhancers	Spleen	Spleen
39	chr11:3967600-3969200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr11:3967600-3969200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr11:3967600-3969400	Enhancers	Brain Anterior Caudate	brain
42	chr11:3967600-3969600	Enhancers	Fetal Lung	lung
43	chr11:3967800-3968800	Enhancers	HSMMtube	muscle
44	chr11:3967800-3969000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr11:3967800-3969000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:3967800-3969000	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr11:3967800-3969000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr11:3967800-3969000	Genic enhancers	HepG2	liver
49	chr11:3967800-3969000	Enhancers	HUVEC	blood vessel
50	chr11:3967800-3969000	Enhancers	NHDF-Ad	bronchial

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