Variant report

Variant	rs61897163
Chromosome Location	chr11:3951175-3951176
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:3946137..3948260-chr11:3950901..3953972,3	MCF-7	breast:
2	chr11:3860976..3863338-chr11:3950724..3953405,2	K562	blood:

Variant related genes	Relation type
ENSG00000177105	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10430939	0.95[ASN][1000 genomes]
rs10458900	0.80[ASN][1000 genomes]
rs10500591	0.95[ASN][1000 genomes]
rs11030251	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11030286	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11030326	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11030327	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11030366	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11030417	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11030418	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11030453	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11030478	0.96[ASN][1000 genomes]
rs11030479	0.96[ASN][1000 genomes]
rs11030481	0.96[ASN][1000 genomes]
rs11030484	0.96[ASN][1000 genomes]
rs11030485	0.96[ASN][1000 genomes]
rs11030486	0.96[ASN][1000 genomes]
rs11030697	0.86[ASN][1000 genomes]
rs11030796	0.81[ASN][1000 genomes]
rs11525342	0.86[ASN][1000 genomes]
rs11529865	0.86[ASN][1000 genomes]
rs12222250	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12224469	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1372803	0.84[ASN][1000 genomes]
rs16929438	0.80[ASN][1000 genomes]
rs16929477	0.84[ASN][1000 genomes]
rs16929480	0.84[ASN][1000 genomes]
rs16929488	0.84[ASN][1000 genomes]
rs16929492	0.86[ASN][1000 genomes]
rs16929529	0.96[ASN][1000 genomes]
rs16929531	0.96[ASN][1000 genomes]
rs16929538	0.96[ASN][1000 genomes]
rs16929540	0.91[ASN][1000 genomes]
rs16929542	0.93[ASN][1000 genomes]
rs16929546	0.96[ASN][1000 genomes]
rs16929611	0.96[ASN][1000 genomes]
rs16929616	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16929653	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1822286	0.82[ASN][1000 genomes]
rs1899478	0.81[ASN][1000 genomes]
rs2167563	0.95[ASN][1000 genomes]
rs3750994	0.80[ASN][1000 genomes]
rs55679086	0.96[ASN][1000 genomes]
rs55978228	0.96[ASN][1000 genomes]
rs56126231	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56140937	0.80[ASN][1000 genomes]
rs59195871	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59242983	0.82[ASN][1000 genomes]
rs60930198	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61897162	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61897164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61897166	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61897167	0.92[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61897170	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61897171	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61897194	0.92[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61897195	0.95[ASN][1000 genomes]
rs61897201	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs61897202	0.96[ASN][1000 genomes]
rs61897203	0.83[ASN][1000 genomes]
rs61897234	0.85[ASN][1000 genomes]
rs61897237	0.84[ASN][1000 genomes]
rs61897238	0.82[ASN][1000 genomes]
rs61897254	0.80[ASN][1000 genomes]
rs6578423	0.96[ASN][1000 genomes]
rs723779	0.89[ASN][1000 genomes]
rs72847181	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72851736	0.96[ASN][1000 genomes]
rs750526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941743	0.96[ASN][1000 genomes]
rs894454	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049560	chr11:3678259-3980746	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv540907	chr11:3678259-3980746	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1052744	chr11:3739162-4017601	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1047025	chr11:3750969-4017601	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1046065	chr11:3808818-4049150	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv540909	chr11:3808818-4049150	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv869701	chr11:3879297-3973762	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv1043039	chr11:3903226-3955159	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv896895	chr11:3942001-3972236	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3938400-3956400	Weak transcription	Dnd41	blood
2	chr11:3939000-3956000	Weak transcription	Esophagus	oesophagus
3	chr11:3943400-3954800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:3943800-3953200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:3947200-3952200	Enhancers	Liver	Liver
6	chr11:3948000-3951400	Enhancers	Fetal Stomach	stomach
7	chr11:3948000-3952200	Enhancers	Fetal Muscle Leg	muscle
8	chr11:3948200-3955800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:3948200-3955800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:3948400-3951200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:3948400-3952800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:3948400-3960400	Weak transcription	NHEK	skin
13	chr11:3948600-3955600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr11:3948800-3951200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr11:3948800-3951400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:3948800-3954400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr11:3948800-3960800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:3949000-3961400	Weak transcription	Right Atrium	heart
19	chr11:3949200-3954200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:3949400-3951400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr11:3949400-3959400	Weak transcription	Fetal Lung	lung
22	chr11:3949600-3951600	Enhancers	Right Ventricle	heart
23	chr11:3949600-3953600	Strong transcription	Primary T cells from cord blood	blood
24	chr11:3949800-3951400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:3949800-3951400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr11:3949800-3951600	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr11:3949800-3952600	Enhancers	Fetal Heart	heart
28	chr11:3950000-3951200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:3950000-3951400	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr11:3950000-3952000	Enhancers	Colon Smooth Muscle	Colon
31	chr11:3950000-3953000	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr11:3950000-3957600	Weak transcription	GM12878-XiMat	blood
33	chr11:3950200-3951200	Genic enhancers	Primary B cells from peripheral blood	blood
34	chr11:3950200-3951400	Enhancers	Aorta	Aorta
35	chr11:3950200-3951400	Genic enhancers	Fetal Thymus	thymus
36	chr11:3950200-3951600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:3950200-3951800	Enhancers	Left Ventricle	heart
38	chr11:3950200-3952000	Enhancers	Pancreas	Pancrea
39	chr11:3950200-3953600	Enhancers	Psoas Muscle	Psoas
40	chr11:3950400-3951200	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr11:3950400-3951200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:3950400-3951400	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr11:3950400-3951400	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr11:3950400-3951600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:3950400-3951600	Genic enhancers	K562	blood
46	chr11:3950400-3952400	Enhancers	HepG2	liver
47	chr11:3950400-3972200	Weak transcription	Fetal Muscle Trunk	muscle
48	chr11:3950600-3951200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:3950600-3951200	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr11:3950600-3951200	Enhancers	Fetal Kidney	kidney

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