Variant report

Variant	rs11827873
Chromosome Location	chr11:63318719-63318720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:63317481..63319268-chr11:63322890..63325097,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11824369	1.00[AMR][1000 genomes]
rs11827851	1.00[AMR][1000 genomes]
rs59628575	1.00[AMR][1000 genomes]
rs7111600	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63305400-63319000	Weak transcription	Aorta	Aorta
2	chr11:63305800-63319200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:63306400-63318800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:63306800-63327600	Weak transcription	Pancreas	Pancrea
5	chr11:63307000-63319000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:63307800-63328200	Weak transcription	Colon Smooth Muscle	Colon
7	chr11:63310400-63318800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr11:63310800-63319200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr11:63311600-63320200	Weak transcription	Primary B cells from cord blood	blood
10	chr11:63311800-63319200	Weak transcription	GM12878-XiMat	blood
11	chr11:63312600-63319000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr11:63313000-63320400	Weak transcription	Stomach Mucosa	stomach
13	chr11:63313000-63321000	Weak transcription	Placenta	Placenta
14	chr11:63313600-63328000	Weak transcription	Colonic Mucosa	Colon
15	chr11:63313800-63319400	Weak transcription	Small Intestine	intestine
16	chr11:63314600-63318800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr11:63315000-63318800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:63315000-63319200	Weak transcription	Adipose Nuclei	Adipose
19	chr11:63315000-63319200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr11:63315000-63320400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:63315000-63320400	Weak transcription	Spleen	Spleen
22	chr11:63315000-63321200	Weak transcription	Right Ventricle	heart
23	chr11:63315200-63319000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr11:63315200-63319200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr11:63315200-63319200	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:63315200-63325600	Weak transcription	Lung	lung
27	chr11:63315400-63319000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr11:63315400-63319000	Weak transcription	Thymus	Thymus
29	chr11:63315400-63325800	Weak transcription	Gastric	stomach
30	chr11:63317200-63320600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:63317400-63321200	Weak transcription	Brain Angular Gyrus	brain
32	chr11:63317400-63321200	Weak transcription	Brain Substantia Nigra	brain
33	chr11:63317400-63321400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr11:63317400-63322200	Weak transcription	Brain Anterior Caudate	brain
35	chr11:63317400-63322200	Weak transcription	Brain Hippocampus Middle	brain
36	chr11:63317600-63321200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr11:63317600-63327800	Weak transcription	Esophagus	oesophagus
38	chr11:63318000-63323000	Enhancers	Fetal Thymus	thymus
39	chr11:63318200-63320400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:63318600-63318800	Active TSS	Primary T cells from cord blood	blood
41	chr11:63318600-63318800	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr11:63318600-63318800	Active TSS	HSMMtube	muscle
43	chr11:63318600-63319000	Active TSS	Primary T helper naive cells fromperipheralblood	blood
44	chr11:63318600-63319000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
45	chr11:63318600-63319000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
46	chr11:63318600-63319000	Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr11:63318600-63319000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:63318600-63319000	Active TSS	HSMM	muscle
49	chr11:63318600-63319200	Enhancers	Primary monocytes fromperipheralblood	blood
50	chr11:63318600-63319200	Active TSS	Primary T helper naive cells from peripheral blood	blood

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