Variant report

Variant	rs59628575
Chromosome Location	chr11:63234420-63234421
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11824369	1.00[AMR][1000 genomes]
rs11827851	1.00[AMR][1000 genomes]
rs11827873	1.00[AMR][1000 genomes]
rs35735923	1.00[AFR][1000 genomes]
rs7111600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv1822068	chr11:63146055-63239984	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv468588	chr11:63233363-63320239	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv555179	chr11:63233363-63320239	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63227600-63246200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:63227800-63252600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:63228000-63237800	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:63228200-63235400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:63228400-63238000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr11:63228800-63234800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr11:63229000-63236000	Strong transcription	Adipose Nuclei	Adipose
8	chr11:63231000-63235200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:63231200-63246200	Weak transcription	Colon Smooth Muscle	Colon
10	chr11:63231600-63247400	Weak transcription	Pancreas	Pancrea
11	chr11:63232800-63235000	Strong transcription	Stomach Smooth Muscle	stomach
12	chr11:63233800-63236600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:63234200-63235200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr11:63234200-63236400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:63234200-63244400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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