Variant report

Variant	rs11828163
Chromosome Location	chr2:211267471-211267472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs11821565	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11822181	0.89[AFR][1000 genomes]
rs11822498	0.89[AFR][1000 genomes]
rs11823938	0.89[AFR][1000 genomes]
rs11824344	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11824784	0.89[AFR][1000 genomes]
rs11825014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11826744	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11827274	0.83[EUR][1000 genomes]
rs11828095	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11828784	0.81[EUR][1000 genomes]
rs2204231	0.85[EUR][1000 genomes]
rs2204238	0.97[EUR][1000 genomes]
rs2204240	0.97[EUR][1000 genomes]
rs2217761	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2335084	0.85[EUR][1000 genomes]
rs4341558	0.85[EUR][1000 genomes]
rs55637752	0.81[EUR][1000 genomes]
rs55693437	0.81[EUR][1000 genomes]
rs55744313	0.85[EUR][1000 genomes]
rs55875907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55905894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55956850	0.85[EUR][1000 genomes]
rs56136558	1.00[EUR][1000 genomes]
rs56190771	0.85[EUR][1000 genomes]
rs56234219	0.83[EUR][1000 genomes]
rs56270386	0.80[EUR][1000 genomes]
rs61895860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61895915	0.83[EUR][1000 genomes]
rs61895918	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61895923	1.00[EUR][1000 genomes]
rs61895924	0.97[EUR][1000 genomes]
rs61895934	1.00[EUR][1000 genomes]
rs61895936	0.91[AMR][1000 genomes]
rs61895937	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61895940	0.88[EUR][1000 genomes]
rs61895944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61895949	1.00[EUR][1000 genomes]
rs61895950	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61897264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61897265	1.00[EUR][1000 genomes]
rs61897266	1.00[EUR][1000 genomes]
rs61897267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61897268	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61897273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61897275	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61897281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61897283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61897284	0.89[EUR][1000 genomes]
rs61897285	0.91[EUR][1000 genomes]
rs61897286	1.00[EUR][1000 genomes]
rs61897287	0.92[EUR][1000 genomes]
rs61897288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61897289	1.00[EUR][1000 genomes]
rs61897309	1.00[EUR][1000 genomes]
rs61897310	1.00[EUR][1000 genomes]
rs61897311	0.87[EUR][1000 genomes]
rs61897312	1.00[EUR][1000 genomes]
rs61897313	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61897314	0.97[EUR][1000 genomes]
rs61897318	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61897319	0.97[EUR][1000 genomes]
rs61897323	0.82[EUR][1000 genomes]
rs61897328	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61897329	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61897332	0.83[AMR][1000 genomes]
rs61897333	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61897334	0.90[AFR][1000 genomes]
rs61898068	0.81[EUR][1000 genomes]
rs61898069	0.81[EUR][1000 genomes]
rs61898073	0.81[EUR][1000 genomes]
rs61898074	0.81[EUR][1000 genomes]
rs61898075	0.85[EUR][1000 genomes]
rs61898076	0.85[EUR][1000 genomes]
rs61898077	0.85[EUR][1000 genomes]
rs61898112	0.85[EUR][1000 genomes]
rs61898116	0.85[EUR][1000 genomes]
rs61898129	0.85[EUR][1000 genomes]
rs61898130	0.83[EUR][1000 genomes]
rs61898132	0.85[EUR][1000 genomes]
rs61898136	0.85[EUR][1000 genomes]
rs61898138	0.83[EUR][1000 genomes]
rs61898139	0.83[EUR][1000 genomes]
rs61898140	0.83[EUR][1000 genomes]
rs61898141	0.83[EUR][1000 genomes]
rs61898142	0.83[EUR][1000 genomes]
rs61898145	0.85[EUR][1000 genomes]
rs61898148	0.80[EUR][1000 genomes]
rs61898149	0.85[EUR][1000 genomes]
rs61898150	0.85[EUR][1000 genomes]
rs61898158	0.89[EUR][1000 genomes]
rs61898159	0.83[EUR][1000 genomes]
rs7113707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7127125	0.97[EUR][1000 genomes]
rs7929786	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7930167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7937169	0.83[AMR][1000 genomes]
rs7938008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9666022	0.85[EUR][1000 genomes]
rs9666206	0.85[EUR][1000 genomes]
rs9666460	0.81[EUR][1000 genomes]
rs9666612	0.83[EUR][1000 genomes]
rs9667029	0.85[EUR][1000 genomes]
rs9736366	1.00[EUR][1000 genomes]
rs9736982	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012567	chr2:211087588-211315554	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv875767	chr2:211119233-211334647	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211266400-211270000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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