Variant report

Variant	rs11828486
Chromosome Location	chr2:211051489-211051490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11820046	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2201851	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2201852	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61890358	0.90[EUR][1000 genomes]
rs61890417	0.95[EUR][1000 genomes]
rs61891350	0.80[EUR][1000 genomes]
rs61891351	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs61891352	0.95[EUR][1000 genomes]
rs61891353	0.90[EUR][1000 genomes]
rs61891393	0.85[EUR][1000 genomes]
rs61891428	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61891429	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61891430	0.90[EUR][1000 genomes]
rs61891431	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61891432	0.90[EUR][1000 genomes]
rs61891433	0.87[EUR][1000 genomes]
rs61891434	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61891435	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61891436	0.85[EUR][1000 genomes]
rs61891437	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61891438	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61892962	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7106969	0.90[EUR][1000 genomes]
rs7108758	0.90[EUR][1000 genomes]
rs7109304	0.90[EUR][1000 genomes]
rs7113205	0.90[EUR][1000 genomes]
rs7117992	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7121698	0.90[EUR][1000 genomes]
rs7125291	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7128581	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv1795338	chr2:210758078-211098113	Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv1802749	chr2:210905194-211255611	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211043200-211053000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:211046800-211051800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:211046800-211059800	Weak transcription	Pancreas	Pancrea
4	chr2:211047400-211053000	Weak transcription	Thymus	Thymus
5	chr2:211050200-211052000	Weak transcription	Aorta	Aorta
6	chr2:211050400-211054200	Weak transcription	Liver	Liver
7	chr2:211051000-211086600	Weak transcription	Adipose Nuclei	Adipose

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