Variant report

Variant	rs11828696
Chromosome Location	chr11:86438123-86438124
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11820753	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822284	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822315	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788638	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12795632	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17149343	1.00[ASN][1000 genomes]
rs28382326	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34735706	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35082176	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35326405	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245425	1.00[ASN][1000 genomes]
rs4943956	1.00[ASN][1000 genomes]
rs4944626	1.00[ASN][1000 genomes]
rs4944627	1.00[ASN][1000 genomes]
rs4944628	1.00[ASN][1000 genomes]
rs55969927	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7115213	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465651	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86407000-86451600	Weak transcription	Left Ventricle	heart
2	chr11:86424200-86449800	Weak transcription	Pancreas	Pancrea
3	chr11:86431800-86438200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:86434800-86446400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:86435200-86439000	Enhancers	HMEC	breast
6	chr11:86436400-86438800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:86436400-86439000	Enhancers	Hela-S3	cervix
8	chr11:86436600-86438400	Enhancers	NHEK	skin
9	chr11:86436600-86439600	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:86437200-86440400	Enhancers	A549	lung
11	chr11:86437600-86446000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:86437800-86439000	Weak transcription	HSMM	muscle
13	chr11:86437800-86439600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:86437800-86439600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:86437800-86444200	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:86437800-86446400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:86438000-86439400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:86438000-86446200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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