Variant report

Variant	rs71465651
Chromosome Location	chr11:86431565-86431566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86377242..86379292-chr11:86431051..86433926,2	MCF-7	breast:
2	chr11:86429406..86432561-chr11:86511034..86513037,4	MCF-7	breast:
3	chr11:86383130..86385721-chr11:86429395..86432301,2	MCF-7	breast:
4	chr11:86430742..86432818-chr11:86447067..86449171,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction
ENSG00000151376	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11820753	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822284	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11822315	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828696	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788638	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12795632	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17149343	1.00[ASN][1000 genomes]
rs28382326	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34735706	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35082176	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35326405	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245425	1.00[ASN][1000 genomes]
rs4943956	1.00[ASN][1000 genomes]
rs4944626	1.00[ASN][1000 genomes]
rs4944627	1.00[ASN][1000 genomes]
rs4944628	1.00[ASN][1000 genomes]
rs55969927	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592313	0.88[AFR][1000 genomes]
rs7115213	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86407000-86451600	Weak transcription	Left Ventricle	heart
2	chr11:86424200-86449800	Weak transcription	Pancreas	Pancrea
3	chr11:86425000-86434600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:86428600-86431800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:86428600-86433400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:86428600-86433400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:86428600-86433600	Enhancers	HMEC	breast
8	chr11:86428800-86432400	Enhancers	HUVEC	blood vessel
9	chr11:86428800-86433600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:86428800-86433600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr11:86428800-86433600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:86428800-86433600	Enhancers	NHEK	skin
13	chr11:86428800-86433800	Enhancers	NHDF-Ad	bronchial
14	chr11:86429000-86433800	Enhancers	Osteobl	bone
15	chr11:86429200-86433200	Enhancers	Hela-S3	cervix
16	chr11:86429200-86433600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:86429400-86432000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:86429600-86431800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:86429600-86433400	Enhancers	NH-A	brain
20	chr11:86430600-86431600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:86430600-86432000	Flanking Active TSS	A549	lung
22	chr11:86430600-86432200	Enhancers	HSMMtube	muscle
23	chr11:86430600-86433000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:86430600-86433000	Enhancers	NHLF	lung
25	chr11:86430600-86433600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:86430800-86431600	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr11:86430800-86432400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr11:86430800-86432800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:86430800-86433000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:86431000-86431800	Enhancers	Placenta Amnion	Placenta Amnion
31	chr11:86431200-86431600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:86431200-86431600	Enhancers	Fetal Thymus	thymus
33	chr11:86431400-86431600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr11:86431400-86431600	Enhancers	Aorta	Aorta
35	chr11:86431400-86433400	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links