Variant report

Variant	rs11828899
Chromosome Location	chr11:85662576-85662577
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85659757..85662589-chr11:85664114..85665919,2	K562	blood:
2	chr11:85650684..85656124-chr11:85659031..85663462,6	K562	blood:
3	chr11:85652246..85655077-chr11:85661879..85663462,2	K562	blood:
4	chr11:85661662..85663622-chr11:85665077..85667243,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11820073	0.87[AFR][1000 genomes]
rs11820972	0.87[AFR][1000 genomes]
rs11826206	0.81[AFR][1000 genomes]
rs11828355	0.87[AFR][1000 genomes]
rs28762197	0.81[AFR][1000 genomes]
rs55873745	0.87[AFR][1000 genomes]
rs57062119	0.87[AFR][1000 genomes]
rs58070723	0.84[AFR][1000 genomes]
rs59034718	0.81[AFR][1000 genomes]
rs61284324	0.87[AFR][1000 genomes]
rs7123605	0.87[AFR][1000 genomes]
rs7929743	0.81[AFR][1000 genomes]
rs7939690	0.81[AFR][1000 genomes]
rs7948653	0.87[AFR][1000 genomes]
rs7948822	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1053599	chr11:85641619-85684353	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv1040567	chr11:85641619-85684935	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85646600-85667400	Weak transcription	Gastric	stomach
2	chr11:85652800-85664400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:85652800-85668800	Weak transcription	Small Intestine	intestine
4	chr11:85656000-85679800	Weak transcription	Fetal Brain Male	brain
5	chr11:85657200-85665600	Weak transcription	Lung	lung
6	chr11:85657600-85665600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:85657600-85666600	Weak transcription	Spleen	Spleen
8	chr11:85657800-85664200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:85658400-85666600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:85658400-85667400	Weak transcription	Pancreas	Pancrea
11	chr11:85658600-85664400	Weak transcription	Primary B cells from cord blood	blood
12	chr11:85658600-85664400	Weak transcription	Liver	Liver
13	chr11:85658600-85664600	Weak transcription	Fetal Thymus	thymus
14	chr11:85658600-85665400	Weak transcription	Aorta	Aorta
15	chr11:85658600-85665400	Weak transcription	Left Ventricle	heart
16	chr11:85658600-85667400	Weak transcription	Esophagus	oesophagus
17	chr11:85658600-85673000	Weak transcription	Right Ventricle	heart
18	chr11:85658800-85664600	Weak transcription	Thymus	Thymus
19	chr11:85658800-85665400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr11:85659000-85665000	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:85659200-85664400	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:85659400-85664400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr11:85659400-85664400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:85659400-85664600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:85659400-85665400	Weak transcription	Right Atrium	heart
26	chr11:85659400-85665400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr11:85659400-85666400	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr11:85659400-85745800	Weak transcription	Stomach Mucosa	stomach
29	chr11:85659600-85664200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr11:85659600-85664400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr11:85659600-85664400	Weak transcription	HSMMtube	muscle
32	chr11:85659600-85664600	Weak transcription	Fetal Stomach	stomach
33	chr11:85659600-85666200	Weak transcription	Rectal Smooth Muscle	rectum
34	chr11:85659600-85666400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:85659800-85666800	Weak transcription	Fetal Lung	lung
36	chr11:85660000-85666400	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr11:85660200-85664200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr11:85660200-85664200	Weak transcription	Brain Anterior Caudate	brain
39	chr11:85660200-85664400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:85660200-85664400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr11:85660200-85664400	Weak transcription	Adipose Nuclei	Adipose
42	chr11:85660200-85664400	Weak transcription	HSMM	muscle
43	chr11:85660200-85664400	Weak transcription	NH-A	brain
44	chr11:85660200-85664400	Weak transcription	NHLF	lung
45	chr11:85660200-85664600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr11:85660200-85664600	Weak transcription	Brain Substantia Nigra	brain
47	chr11:85660200-85664600	Weak transcription	Fetal Kidney	kidney
48	chr11:85660200-85664800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr11:85660200-85665000	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr11:85660200-85666200	Weak transcription	Brain Inferior Temporal Lobe	brain

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