Variant report

Variant	rs7939690
Chromosome Location	chr11:85639560-85639561
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11820073	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11820972	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825912	1.00[EUR][1000 genomes]
rs11826206	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827521	1.00[AMR][1000 genomes]
rs11828355	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828899	0.81[AFR][1000 genomes]
rs12279581	1.00[EUR][1000 genomes]
rs17148600	1.00[EUR][1000 genomes]
rs2509347	1.00[EUR][1000 genomes]
rs28762197	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55873745	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56012164	1.00[AMR][1000 genomes]
rs57062119	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58070723	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59019168	1.00[EUR][1000 genomes]
rs59034718	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60253048	1.00[EUR][1000 genomes]
rs61284324	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61535933	1.00[EUR][1000 genomes]
rs7123605	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7929743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948653	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7948822	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85637800-85639600	Enhancers	Liver	Liver
2	chr11:85638400-85645800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:85639200-85641800	Weak transcription	HepG2	liver

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