Variant report

Variant	rs11827521
Chromosome Location	chr11:85829104-85829105
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85827653..85830029-chr11:85842265..85844324,3	K562	blood:
2	chr11:85827660..85829775-chr11:85890965..85893540,2	K562	blood:
3	chr11:85816871..85820639-chr11:85825942..85829677,4	K562	blood:
4	chr11:85828022..85829575-chr11:85954011..85956360,2	K562	blood:
5	chr11:85827002..85832130-chr11:85832527..85838500,7	MCF-7	breast:
6	chr11:85827592..85829665-chr11:85832093..85833699,2	K562	blood:
7	chr11:85828354..85830136-chr11:85831777..85833515,2	K562	blood:

Variant related genes	Relation type
ENSG00000074266	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11820073	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs11820972	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11824464	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824532	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825354	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826206	1.00[AMR][1000 genomes]
rs11827284	0.93[AFR][1000 genomes]
rs11828355	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11828809	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28762197	1.00[AMR][1000 genomes]
rs55873745	1.00[AMR][1000 genomes]
rs55918324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56012164	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57062119	1.00[AMR][1000 genomes]
rs57331509	0.93[AFR][1000 genomes]
rs58070075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58070723	1.00[AMR][1000 genomes]
rs60250801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60953189	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61284324	1.00[AMR][1000 genomes]
rs61676661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6592270	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121487	1.00[AMR][1000 genomes]
rs7123605	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7129827	0.93[AFR][1000 genomes]
rs7929743	1.00[AMR][1000 genomes]
rs7939690	1.00[AMR][1000 genomes]
rs7948653	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7948822	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85824800-85837600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:85826200-85829800	Enhancers	K562	blood
3	chr11:85826400-85830400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr11:85826800-85830000	Enhancers	Stomach Smooth Muscle	stomach
5	chr11:85827400-85829600	Enhancers	Fetal Intestine Large	intestine
6	chr11:85827400-85830600	Enhancers	Rectal Smooth Muscle	rectum
7	chr11:85827400-85832800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:85827600-85829400	Weak transcription	Brain Anterior Caudate	brain
9	chr11:85827800-85829200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr11:85827800-85829200	Enhancers	HMEC	breast
11	chr11:85827800-85829200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr11:85828000-85829200	Enhancers	NHEK	skin
13	chr11:85828000-85829600	Enhancers	Fetal Intestine Small	intestine
14	chr11:85828000-85834200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:85828200-85830400	Enhancers	NH-A	brain
16	chr11:85828400-85829400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr11:85828400-85829400	Weak transcription	Small Intestine	intestine
18	chr11:85828600-85829200	Enhancers	Duodenum Mucosa	Duodenum
19	chr11:85828600-85829400	Enhancers	A549	lung
20	chr11:85828600-85830200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr11:85828600-85832200	Weak transcription	Placenta	Placenta
22	chr11:85828800-85829600	Enhancers	HepG2	liver
23	chr11:85829000-85830200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:85829000-85830600	Enhancers	Colon Smooth Muscle	Colon

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