Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85812308..85815576-chr11:85816844..85820250,5	K562	blood:
2	chr11:85816871..85820639-chr11:85825942..85829677,4	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11602524	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602665	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603511	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604014	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606748	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607590	1.00[ASN][1000 genomes]
rs11824532	0.89[AFR][1000 genomes]
rs11825354	0.93[AFR][1000 genomes]
rs11827284	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11827521	0.93[AFR][1000 genomes]
rs11828809	0.93[AFR][1000 genomes]
rs12804667	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196824	1.00[ASN][1000 genomes]
rs3862786	1.00[ASN][1000 genomes]
rs55918324	0.93[AFR][1000 genomes]
rs56012164	1.00[AFR][1000 genomes]
rs58070075	0.93[AFR][1000 genomes]
rs60250801	0.93[AFR][1000 genomes]
rs60953189	0.90[AFR][1000 genomes]
rs61676661	0.93[AFR][1000 genomes]
rs6592270	0.93[AFR][1000 genomes]
rs6592271	1.00[ASN][1000 genomes]
rs7110817	0.93[AFR][1000 genomes]
rs7129827	0.87[AFR][1000 genomes]
rs7942719	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85813400-85818200	Weak transcription	HSMM	muscle
2	chr11:85813400-85818200	Weak transcription	NH-A	brain
3	chr11:85813600-85818000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:85813600-85818200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:85813600-85826600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:85813800-85818000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:85813800-85818200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:85813800-85818200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:85813800-85818200	Weak transcription	Osteobl	bone
10	chr11:85815400-85818200	Weak transcription	K562	blood

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