Variant report

Variant	rs11603511
Chromosome Location	chr11:85802925-85802926
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZMIZ1	chr11:85802736-85802954	K562	blood:	n/a	n/a
2	YY1	chr11:85802732-85802934	K562	blood:	n/a	n/a
3	MYC	chr11:85802746-85802946	MCF10A-Er-Src	breast:	n/a	n/a
4	MAX	chr11:85802618-85802936	K562	blood:	n/a	n/a
5	MYC	chr11:85802814-85802934	K562	blood:	n/a	n/a
6	RCOR1	chr11:85802904-85802928	K562	blood:	n/a	n/a
7	CEBPB	chr11:85802662-85803009	IMR90	lung:	n/a	n/a
8	IRF1	chr11:85802925-85803026	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85796338..85798988-chr11:85799126..85803247,4	K562	blood:

Variant related genes	Relation type
ENSG00000238666	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11602524	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11602665	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606748	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607590	1.00[ASN][1000 genomes]
rs11827284	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12804667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196824	1.00[ASN][1000 genomes]
rs3862786	1.00[ASN][1000 genomes]
rs57331509	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592271	1.00[ASN][1000 genomes]
rs7942719	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85798400-85803800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:85801400-85804000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:85802000-85803400	Enhancers	Osteobl	bone
4	chr11:85802200-85803400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:85802400-85803200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:85802400-85803200	Enhancers	NH-A	brain
7	chr11:85802400-85803200	Enhancers	NHLF	lung
8	chr11:85802400-85803400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:85802600-85803000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:85802600-85803000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:85802600-85803000	Enhancers	HepG2	liver
12	chr11:85802600-85803000	Enhancers	HSMMtube	muscle
13	chr11:85802600-85803200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:85802600-85803200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr11:85802600-85803200	Enhancers	Adipose Nuclei	Adipose
16	chr11:85802600-85803200	Enhancers	Liver	Liver
17	chr11:85802600-85803200	Enhancers	Right Atrium	heart
18	chr11:85802600-85803200	Enhancers	HMEC	breast
19	chr11:85802600-85803200	Enhancers	HSMM	muscle
20	chr11:85802600-85803200	Enhancers	K562	blood
21	chr11:85802600-85803200	Enhancers	NHDF-Ad	bronchial
22	chr11:85802600-85803200	Enhancers	NHEK	skin
23	chr11:85802600-85803400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:85802600-85803400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:85802600-85803600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:85802800-85803000	Enhancers	Fetal Heart	heart
27	chr11:85802800-85803200	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr11:85802800-85803200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr11:85802800-85803400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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