Variant report

Variant	rs11602665
Chromosome Location	chr11:85838126-85838127
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:85829897..85832086-chr11:85836791..85838653,2	K562	blood:
2	chr11:85659346..85662146-chr11:85836762..85839271,2	K562	blood:
3	chr11:85837959..85840215-chr11:86014707..86016987,2	K562	blood:
4	chr11:85835506..85837110-chr11:85837599..85840218,2	K562	blood:
5	chr11:85836520..85838381-chr11:85894260..85896246,2	K562	blood:
6	chr11:85827002..85832130-chr11:85832527..85838500,7	MCF-7	breast:
7	chr11:85778368..85780171-chr11:85838108..85841104,2	K562	blood:
8	chr11:85837219..85838981-chr11:85844056..85845625,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11602524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11603511	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11604014	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607590	1.00[ASN][1000 genomes]
rs11827284	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12804667	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2196824	1.00[ASN][1000 genomes]
rs3862786	1.00[ASN][1000 genomes]
rs57331509	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6592271	1.00[ASN][1000 genomes]
rs7942719	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85832800-85838200	Enhancers	Placenta	Placenta
2	chr11:85835600-85838600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr11:85835800-85845600	Weak transcription	Brain Anterior Caudate	brain
4	chr11:85836200-85839600	Weak transcription	K562	blood
5	chr11:85836800-85839200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr11:85837000-85839000	Enhancers	Brain Hippocampus Middle	brain
7	chr11:85837200-85839200	Enhancers	Brain Cingulate Gyrus	brain
8	chr11:85837400-85838200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:85837600-85838200	Enhancers	Ovary	ovary
10	chr11:85837600-85839000	Enhancers	Brain Angular Gyrus	brain
11	chr11:85837800-85838200	Enhancers	Fetal Intestine Large	intestine
12	chr11:85838000-85838200	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr11:85838000-85838600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:85838000-85838600	Enhancers	HepG2	liver
15	chr11:85838000-85838800	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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