Variant report

Variant	rs56012164
Chromosome Location	chr11:85813252-85813253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85812308..85815576-chr11:85816844..85820250,5	K562	blood:
2	chr11:85806231..85808267-chr11:85813007..85815031,2	K562	blood:
3	chr11:85538884..85541590-chr11:85810993..85813631,2	MCF-7	breast:
4	chr11:85810855..85813680-chr11:85847452..85850001,2	K562	blood:
5	chr11:85778602..85782954-chr11:85809019..85814326,4	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11820073	1.00[AMR][1000 genomes]
rs11820972	1.00[AMR][1000 genomes]
rs11824464	1.00[AMR][1000 genomes]
rs11824532	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825354	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826206	1.00[AMR][1000 genomes]
rs11827284	1.00[AFR][1000 genomes]
rs11827521	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828355	1.00[AMR][1000 genomes]
rs11828809	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28762197	1.00[AMR][1000 genomes]
rs55873745	1.00[AMR][1000 genomes]
rs55918324	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57062119	1.00[AMR][1000 genomes]
rs57331509	1.00[AFR][1000 genomes]
rs58070075	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58070723	1.00[AMR][1000 genomes]
rs59034718	1.00[AMR][1000 genomes]
rs60250801	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60953189	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61284324	1.00[AMR][1000 genomes]
rs61676661	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6592270	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110817	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121487	1.00[AMR][1000 genomes]
rs7123605	1.00[AMR][1000 genomes]
rs7129827	0.87[AFR][1000 genomes]
rs7929743	1.00[AMR][1000 genomes]
rs7939690	1.00[AMR][1000 genomes]
rs7948653	1.00[AMR][1000 genomes]
rs7948822	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85811400-85814800	Weak transcription	K562	blood
2	chr11:85812000-85813400	Enhancers	NH-A	brain
3	chr11:85812000-85813800	Enhancers	Osteobl	bone
4	chr11:85812200-85813800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:85812400-85813400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:85812400-85813400	Enhancers	HMEC	breast
7	chr11:85812400-85813400	Enhancers	HSMM	muscle
8	chr11:85812400-85813600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:85812400-85813600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:85812400-85813600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:85812400-85813600	Enhancers	NHDF-Ad	bronchial
12	chr11:85812400-85813800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:85812600-85813400	Flanking Active TSS	A549	lung
14	chr11:85812600-85813400	Enhancers	NHLF	lung
15	chr11:85812600-85813600	Enhancers	HSMMtube	muscle
16	chr11:85812600-85813800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:85812800-85813600	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr11:85813000-85813400	Enhancers	Brain Cingulate Gyrus	brain
19	chr11:85813000-85813400	Enhancers	HepG2	liver
20	chr11:85813000-85813600	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr11:85813000-85814000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:85813200-85813400	Enhancers	Liver	Liver
23	chr11:85813200-85813400	Enhancers	Brain Substantia Nigra	brain
24	chr11:85813200-85813600	Flanking Active TSS	Hela-S3	cervix

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