Variant report

Variant	rs7110817
Chromosome Location	chr11:85856455-85856456
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85855764..85858866-chr11:85871267..85874151,3	K562	blood:
2	chr11:85854757..85856923-chr11:85869692..85871194,2	K562	blood:
3	chr11:85777613..85779619-chr11:85854927..85856671,2	K562	blood:
4	chr11:85852725..85854278-chr11:85855856..85858285,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11820073	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs11820972	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11824464	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824532	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825354	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826206	1.00[AMR][1000 genomes]
rs11827284	0.93[AFR][1000 genomes]
rs11827521	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828355	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11828809	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55873745	1.00[AMR][1000 genomes]
rs55918324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56012164	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57062119	1.00[AMR][1000 genomes]
rs57331509	0.93[AFR][1000 genomes]
rs58070075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60250801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60953189	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61284324	1.00[AMR][1000 genomes]
rs61676661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6592270	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121487	1.00[AMR][1000 genomes]
rs7123605	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7129827	0.93[AFR][1000 genomes]
rs7948653	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7948822	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85845200-85858600	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:85845800-85859800	Weak transcription	Aorta	Aorta
3	chr11:85846400-85862200	Weak transcription	Psoas Muscle	Psoas
4	chr11:85848000-85861200	Weak transcription	Small Intestine	intestine
5	chr11:85848000-85861600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:85849000-85858600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:85849200-85857200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr11:85850400-85862600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:85850600-85856800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:85852600-85859200	Weak transcription	Brain Anterior Caudate	brain
11	chr11:85852800-85862200	Weak transcription	Right Atrium	heart
12	chr11:85853200-85859800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:85853200-85860200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:85853200-85860600	Weak transcription	Osteobl	bone
15	chr11:85853800-85856600	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr11:85854200-85856600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr11:85854400-85856600	Enhancers	Fetal Lung	lung
18	chr11:85854400-85862800	Weak transcription	Primary B cells from cord blood	blood
19	chr11:85854600-85857400	Enhancers	Duodenum Mucosa	Duodenum
20	chr11:85854800-85856800	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr11:85854800-85857000	Enhancers	Brain Substantia Nigra	brain
22	chr11:85854800-85857400	Enhancers	Fetal Intestine Small	intestine
23	chr11:85854800-85862600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:85855000-85856800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:85855000-85861800	Weak transcription	Adipose Nuclei	Adipose
26	chr11:85855000-85862000	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr11:85855200-85858000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr11:85855400-85856600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr11:85855400-85856800	Enhancers	Brain Angular Gyrus	brain
30	chr11:85855400-85857000	Enhancers	Brain Hippocampus Middle	brain
31	chr11:85855400-85857200	Enhancers	Fetal Intestine Large	intestine
32	chr11:85855600-85856800	Enhancers	Brain Cingulate Gyrus	brain
33	chr11:85855600-85856800	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr11:85855600-85857000	Enhancers	Stomach Mucosa	stomach
35	chr11:85855600-85857800	Enhancers	K562	blood
36	chr11:85855800-85857200	Enhancers	A549	lung
37	chr11:85855800-85862200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr11:85856000-85856800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr11:85856000-85861800	Weak transcription	GM12878-XiMat	blood
40	chr11:85856200-85856600	Flanking Active TSS	Liver	Liver
41	chr11:85856200-85859600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:85856200-85862200	Weak transcription	Primary hematopoietic stem cells	blood
43	chr11:85856400-85856600	Active TSS	Fetal Kidney	kidney
44	chr11:85856400-85856600	Enhancers	Rectal Mucosa Donor 31	rectum
45	chr11:85856400-85856800	Flanking Active TSS	HepG2	liver

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