Variant report

Variant	rs61676661
Chromosome Location	chr11:85867262-85867263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85864981..85867412-chr11:85905656..85909447,3	K562	blood:
2	chr11:85864815..85867737-chr11:85873102..85874804,3	MCF-7	breast:
3	chr11:85867086..85869713-chr11:85872551..85875438,3	K562	blood:
4	chr11:85778606..85781655-chr11:85865896..85868679,3	K562	blood:
5	chr11:85862649..85865234-chr11:85865987..85868104,3	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction
ENSG00000200877	Chromatin interaction
ENSG00000254502	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11820073	1.00[AMR][1000 genomes]
rs11820972	1.00[AMR][1000 genomes]
rs11824464	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824532	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826206	1.00[AMR][1000 genomes]
rs11827284	0.93[AFR][1000 genomes]
rs11827521	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828355	1.00[AMR][1000 genomes]
rs11828809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55873745	1.00[AMR][1000 genomes]
rs55918324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56012164	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57062119	1.00[AMR][1000 genomes]
rs57331509	0.93[AFR][1000 genomes]
rs58070075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60250801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60953189	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6592270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121487	1.00[AMR][1000 genomes]
rs7123605	1.00[AMR][1000 genomes]
rs7129827	0.93[AFR][1000 genomes]
rs7948653	1.00[AMR][1000 genomes]
rs7948822	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85862600-85867400	Weak transcription	Pancreas	Pancrea
2	chr11:85863000-85867600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr11:85863400-85867400	Weak transcription	Spleen	Spleen
4	chr11:85863400-85870400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:85863400-85870600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:85863400-85872600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:85863400-85873000	Weak transcription	Lung	lung
8	chr11:85863600-85867400	Weak transcription	Left Ventricle	heart
9	chr11:85863600-85867400	Weak transcription	Right Atrium	heart
10	chr11:85863600-85867400	Weak transcription	Right Ventricle	heart
11	chr11:85863600-85869400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:85863600-85869600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:85863600-85871200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:85863800-85867400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:85863800-85867400	Weak transcription	Placenta	Placenta
16	chr11:85863800-85867400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:85863800-85871000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr11:85864000-85867400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr11:85864000-85868800	Weak transcription	Hela-S3	cervix
20	chr11:85864200-85867400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:85864200-85870400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:85864200-85870800	Weak transcription	HSMM	muscle
23	chr11:85864200-85871600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:85864200-85871600	Weak transcription	Brain Angular Gyrus	brain
25	chr11:85864200-85871600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:85864200-85872000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:85864400-85867400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr11:85864400-85867400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr11:85864400-85871600	Weak transcription	Brain Anterior Caudate	brain
30	chr11:85864600-85870200	Weak transcription	Brain Substantia Nigra	brain
31	chr11:85864600-85870600	Weak transcription	Fetal Lung	lung
32	chr11:85865000-85867400	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:85865200-85867400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:85865200-85870600	Weak transcription	Fetal Intestine Large	intestine
35	chr11:85865200-85871000	Weak transcription	Small Intestine	intestine
36	chr11:85865200-85871200	Weak transcription	Duodenum Mucosa	Duodenum
37	chr11:85865200-85872400	Weak transcription	Liver	Liver
38	chr11:85865400-85874400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:85865800-85867400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr11:85865800-85868000	Enhancers	NHEK	skin
41	chr11:85866000-85867800	Enhancers	HMEC	breast
42	chr11:85866000-85868000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr11:85866000-85869600	Enhancers	K562	blood
44	chr11:85866200-85867800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr11:85866400-85870200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr11:85866400-85874200	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr11:85866600-85867400	Enhancers	Primary neutrophils fromperipheralblood	blood
48	chr11:85866600-85867400	Weak transcription	Fetal Thymus	thymus
49	chr11:85866600-85873000	Weak transcription	Gastric	stomach
50	chr11:85867000-85867400	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links