Variant report

Variant	rs7121487
Chromosome Location	chr11:85876716-85876717
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:85778960..85780498-chr11:85875598..85877997,2	MCF-7	breast:
2	chr11:85873974..85877106-chr11:85877534..85882400,5	K562	blood:
3	chr11:85856625..85859004-chr11:85876642..85878887,2	K562	blood:

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11820073	1.00[AMR][1000 genomes]
rs11820972	1.00[AMR][1000 genomes]
rs11824464	1.00[AMR][1000 genomes]
rs11824532	1.00[AMR][1000 genomes]
rs11825354	1.00[AMR][1000 genomes]
rs11826206	1.00[AMR][1000 genomes]
rs11827521	1.00[AMR][1000 genomes]
rs11828355	1.00[AMR][1000 genomes]
rs11828809	1.00[AMR][1000 genomes]
rs55918324	1.00[AMR][1000 genomes]
rs56012164	1.00[AMR][1000 genomes]
rs58070075	1.00[AMR][1000 genomes]
rs60250801	1.00[AMR][1000 genomes]
rs60953189	1.00[AMR][1000 genomes]
rs61676661	1.00[AMR][1000 genomes]
rs6592270	1.00[AMR][1000 genomes]
rs7110817	1.00[AMR][1000 genomes]
rs7123605	1.00[AMR][1000 genomes]
rs7948653	1.00[AMR][1000 genomes]
rs7948822	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv832223	chr11:85845315-86015957	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	esv2757460	chr11:85869944-85905513	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759846	chr11:85869944-85905513	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85873400-85878800	Weak transcription	HepG2	liver
2	chr11:85873600-85878800	Weak transcription	Left Ventricle	heart
3	chr11:85873600-85883800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:85873600-85883800	Weak transcription	HSMMtube	muscle
5	chr11:85873600-85884000	Weak transcription	Right Atrium	heart
6	chr11:85873800-85883800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:85874000-85885400	Weak transcription	Small Intestine	intestine
8	chr11:85874200-85884000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:85874400-85878600	Weak transcription	Fetal Lung	lung
10	chr11:85874600-85876800	Enhancers	K562	blood
11	chr11:85874600-85878600	Weak transcription	Fetal Stomach	stomach
12	chr11:85874600-85878800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr11:85874600-85884000	Weak transcription	A549	lung
14	chr11:85875000-85883800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:85875200-85878600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr11:85875200-85878800	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:85875400-85883600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:85875600-85876800	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr11:85875800-85878800	Weak transcription	Placenta	Placenta
20	chr11:85875800-85883800	Weak transcription	HSMM	muscle
21	chr11:85876000-85878200	Weak transcription	Adipose Nuclei	Adipose
22	chr11:85876000-85884000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:85876200-85878600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:85876400-85878600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:85876400-85883200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:85876600-85878000	Weak transcription	Hela-S3	cervix

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