Variant report

Variant	rs6592270
Chromosome Location	chr11:85835596-85835597
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:85834004..85837097-chr11:85843362..85846409,3	K562	blood:
2	chr11:85826255..85828597-chr11:85834380..85836408,2	K562	blood:
3	chr11:85834930..85836499-chr11:85844067..85846409,2	K562	blood:
4	chr11:85830159..85832841-chr11:85834034..85836682,5	K562	blood:
5	chr11:85778842..85780933-chr11:85833573..85835898,2	MCF-7	breast:
6	chr11:85834416..85836001-chr11:85913834..85915379,2	K562	blood:
7	chr11:85823091..85825263-chr11:85834744..85836262,2	MCF-7	breast:
8	chr11:85834231..85835927-chr11:85840891..85843271,2	K562	blood:
9	chr11:85827002..85832130-chr11:85832527..85838500,7	MCF-7	breast:
10	chr11:85835506..85837110-chr11:85837599..85840218,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000073921	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11820073	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs11820972	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11824464	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11824532	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11825354	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826206	1.00[AMR][1000 genomes]
rs11827284	0.93[AFR][1000 genomes]
rs11827521	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11828355	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11828809	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55873745	1.00[AMR][1000 genomes]
rs55918324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56012164	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57062119	1.00[AMR][1000 genomes]
rs57331509	0.93[AFR][1000 genomes]
rs58070075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58070723	1.00[AMR][1000 genomes]
rs60250801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60953189	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61284324	1.00[AMR][1000 genomes]
rs61676661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7110817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121487	1.00[AMR][1000 genomes]
rs7123605	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7129827	0.93[AFR][1000 genomes]
rs7948653	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7948822	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050948	chr11:85756325-85968665	Active TSS Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv541117	chr11:85756325-85968665	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85824800-85837600	Weak transcription	Brain Angular Gyrus	brain
2	chr11:85830600-85836800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:85832800-85838200	Enhancers	Placenta	Placenta
4	chr11:85834000-85836200	Enhancers	GM12878-XiMat	blood
5	chr11:85834000-85836200	Enhancers	K562	blood
6	chr11:85834200-85835600	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr11:85834200-85836200	Enhancers	HepG2	liver
8	chr11:85834400-85835600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:85834600-85836800	Weak transcription	A549	lung
10	chr11:85835000-85835600	Enhancers	Fetal Intestine Large	intestine
11	chr11:85835400-85835600	Enhancers	Aorta	Aorta
12	chr11:85835400-85835600	Enhancers	Stomach Smooth Muscle	stomach

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