Variant report

Variant	rs61535933
Chromosome Location	chr11:85637890-85637891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:85637836-85638022	HepG2	liver:	n/a	chr11:85637983-85637994
2	EP300	chr11:85637753-85638190	HepG2	liver:	n/a	n/a
3	FOXA2	chr11:85637752-85638008	HepG2	liver:	n/a	n/a
4	SP1	chr11:85637743-85638411	HepG2	liver:	n/a	n/a
5	BHLHE40	chr11:85637833-85638019	HepG2	liver:	n/a	n/a
6	TEAD4	chr11:85637809-85638267	HepG2	liver:	n/a	n/a
7	FOXA1	chr11:85637754-85638305	HepG2	liver:	n/a	n/a
8	FOXA1	chr11:85637721-85638413	HepG2	liver:	n/a	n/a
9	MYBL2	chr11:85637735-85638199	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000255005	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10501603	1.00[ASN][1000 genomes]
rs10898431	1.00[ASN][1000 genomes]
rs11234441	1.00[ASN][1000 genomes]
rs11234489	1.00[ASN][1000 genomes]
rs11234492	1.00[ASN][1000 genomes]
rs11234496	1.00[ASN][1000 genomes]
rs11234502	1.00[ASN][1000 genomes]
rs11234512	1.00[ASN][1000 genomes]
rs11234513	1.00[ASN][1000 genomes]
rs11234517	1.00[ASN][1000 genomes]
rs11234522	1.00[ASN][1000 genomes]
rs11825378	1.00[ASN][1000 genomes]
rs11825912	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828161	1.00[ASN][1000 genomes]
rs12278260	1.00[ASN][1000 genomes]
rs12279581	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12281958	1.00[ASN][1000 genomes]
rs12287170	1.00[ASN][1000 genomes]
rs17148600	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17745153	1.00[ASN][1000 genomes]
rs17745236	1.00[ASN][1000 genomes]
rs17817588	1.00[ASN][1000 genomes]
rs17817919	1.00[ASN][1000 genomes]
rs2509347	1.00[EUR][1000 genomes]
rs41381550	1.00[ASN][1000 genomes]
rs4944552	1.00[ASN][1000 genomes]
rs56944537	1.00[ASN][1000 genomes]
rs57125313	1.00[ASN][1000 genomes]
rs58515881	1.00[ASN][1000 genomes]
rs59019168	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59104711	1.00[ASN][1000 genomes]
rs60253048	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60264644	1.00[ASN][1000 genomes]
rs60737637	1.00[ASN][1000 genomes]
rs72951268	1.00[ASN][1000 genomes]
rs72959177	1.00[ASN][1000 genomes]
rs72959197	1.00[ASN][1000 genomes]
rs72963077	1.00[ASN][1000 genomes]
rs72965157	1.00[ASN][1000 genomes]
rs7939690	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1035489	chr11:85502953-85778229	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1048818	chr11:85524635-85746473	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv541116	chr11:85524635-85746473	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv1053808	chr11:85588919-85757693	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85637600-85638000	Weak transcription	HepG2	liver
2	chr11:85637800-85639600	Enhancers	Liver	Liver

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