Variant report

Variant	rs11829217
Chromosome Location	chr12:9918831-9918832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11829361	0.91[AFR][1000 genomes]
rs11830098	0.92[AFR][1000 genomes]
rs11832194	0.92[AFR][1000 genomes]
rs11833226	1.00[AFR][1000 genomes]
rs11834929	1.00[AFR][1000 genomes]
rs3176783	1.00[AFR][1000 genomes]
rs3176785	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758293	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
2	esv2759878	chr12:9371595-9923529	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
3	nsv975645	chr12:9917034-9924808	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9914600-9920200	Enhancers	Primary T cells from cord blood	blood
2	chr12:9917600-9927200	Weak transcription	Esophagus	oesophagus
3	chr12:9918200-9919000	Enhancers	Primary B cells from cord blood	blood
4	chr12:9918200-9919000	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr12:9918400-9919000	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr12:9918400-9919400	Weak transcription	Fetal Thymus	thymus
7	chr12:9918400-9920200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr12:9918400-9920200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr12:9918400-9920600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr12:9918400-9921200	Weak transcription	GM12878-XiMat	blood
11	chr12:9918400-9921800	Enhancers	Dnd41	blood
12	chr12:9918400-9922400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr12:9918400-9924800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr12:9918400-9925800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr12:9918400-9925800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr12:9918400-9925800	Weak transcription	Thymus	Thymus
17	chr12:9918400-9927200	Weak transcription	K562	blood
18	chr12:9918600-9920800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr12:9918600-9921200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr12:9918600-9921200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr12:9918600-9922000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr12:9918600-9922600	Weak transcription	Primary hematopoietic stem cells	blood
23	chr12:9918600-9925400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr12:9918600-9932000	Weak transcription	Primary B cells from peripheral blood	blood
25	chr12:9918800-9919600	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr12:9918800-9919800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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