Variant report

Variant	rs11829361
Chromosome Location	chr12:9926680-9926681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:9923247..9924749-chr12:9924893..9927763,2	MCF-7	breast:
2	chr12:9924505..9927030-chr12:9928111..9932157,3	K562	blood:
3	chr12:9925530..9928012-chr12:9928111..9929858,2	K562	blood:

rs_ID	r²[population]
rs11829217	0.91[AFR][1000 genomes]
rs11830098	0.84[AFR][1000 genomes]
rs11832194	0.84[AFR][1000 genomes]
rs11833226	0.91[AFR][1000 genomes]
rs11834929	0.91[AFR][1000 genomes]
rs3176783	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs3176785	1.00[YRI][hapmap];0.91[AFR][1000 genomes]

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9917600-9927200	Weak transcription	Esophagus	oesophagus
2	chr12:9918400-9927200	Weak transcription	K562	blood
3	chr12:9918600-9932000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr12:9924400-9930200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr12:9924600-9930600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr12:9924800-9929200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr12:9924800-9930200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr12:9925200-9930000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr12:9925200-9930000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr12:9925400-9927600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr12:9925600-9928000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr12:9925600-9928400	Enhancers	Primary hematopoietic stem cells	blood
13	chr12:9925800-9926800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr12:9925800-9926800	Flanking Active TSS	Dnd41	blood
15	chr12:9925800-9927200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
16	chr12:9925800-9927400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr12:9925800-9929400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr12:9926000-9926800	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr12:9926000-9927000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr12:9926200-9930400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr12:9926400-9926800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr12:9926400-9926800	Weak transcription	Thymus	Thymus
23	chr12:9926400-9929200	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr12:9926600-9926800	Enhancers	Primary T cells from cord blood	blood

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