Variant report

Variant	rs11829566
Chromosome Location	chr12:117117476-117117477
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10850699	0.95[EUR][1000 genomes]
rs11830919	0.90[EUR][1000 genomes]
rs11832975	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11832993	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11834830	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16946924	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55868275	1.00[EUR][1000 genomes]
rs55991752	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832523	chr12:117090343-117273810	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117113400-117125600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:117115200-117118400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:117115600-117119000	Weak transcription	Liver	Liver
4	chr12:117115800-117125600	Weak transcription	Primary hematopoietic stem cells	blood
5	chr12:117116800-117117600	Enhancers	GM12878-XiMat	blood
6	chr12:117117400-117122400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links