Variant report

Variant	rs11832993
Chromosome Location	chr12:117124385-117124386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10850699	0.95[EUR][1000 genomes]
rs11829566	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11830919	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11832975	1.00[EUR][1000 genomes]
rs11834830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16946924	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55868275	1.00[EUR][1000 genomes]
rs55991752	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832523	chr12:117090343-117273810	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117113400-117125600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:117115800-117125600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr12:117122600-117127200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:117123000-117125000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:117124000-117124400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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