Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:116380272..116382197-chr12:48898773..48900387,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11168601	0.82[AFR][1000 genomes]
rs11612896	0.91[YRI][hapmap]
rs11829869	0.91[YRI][hapmap]
rs11832311	0.91[YRI][hapmap]
rs11835640	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11835645	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17123105	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs17123106	0.82[AFR][1000 genomes]
rs17123108	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs17123135	0.83[AMR][1000 genomes]
rs2068293	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs2705133	0.87[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs4146339	0.83[YRI][hapmap]
rs4237857	0.91[YRI][hapmap]
rs4265629	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs4344535	1.00[YRI][hapmap]
rs4500527	0.91[YRI][hapmap]
rs4620769	1.00[YRI][hapmap]
rs4760712	0.91[YRI][hapmap]
rs57022528	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs57809090	0.83[AMR][1000 genomes]
rs60756250	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61227501	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7956679	0.91[YRI][hapmap]
rs7966826	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427911	chr12:48670336-48979396	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: