Variant report
| Variant | rs57022528 |
|---|---|
| Chromosome Location | chr12:48906055-48906056 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000197376 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11168601 | 0.82[AFR][1000 genomes] |
| rs11835640 | 0.97[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs11835645 | 0.86[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs17123105 | 0.82[AFR][1000 genomes] |
| rs17123106 | 0.82[AFR][1000 genomes] |
| rs17123108 | 0.82[AFR][1000 genomes] |
| rs17123135 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2068293 | 0.82[AFR][1000 genomes] |
| rs2705158 | 0.83[ASN][1000 genomes] |
| rs2705159 | 0.83[ASN][1000 genomes] |
| rs2731071 | 0.83[ASN][1000 genomes] |
| rs4265629 | 0.82[AFR][1000 genomes] |
| rs57809090 | 0.88[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs59679338 | 1.00[EUR][1000 genomes] |
| rs60756250 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes] |
| rs61227501 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv427911 | chr12:48670336-48979396 | Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| 2 | esv1803653 | chr12:48905575-48923774 | Weak transcription Active TSS ZNF genes & repeats Enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:48906000-48906600 | ZNF genes & repeats | GM12878-XiMat | blood |
