Variant report
| Variant | rs2705158 |
|---|---|
| Chromosome Location | chr12:48904875-48904876 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000197376 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10783256 | 0.81[EUR][1000 genomes] |
| rs2251773 | 0.81[EUR][1000 genomes] |
| rs2705123 | 0.84[EUR][1000 genomes] |
| rs2705126 | 0.85[EUR][1000 genomes] |
| rs2705133 | 0.87[EUR][1000 genomes] |
| rs2705159 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2731069 | 0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2731071 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2731073 | 0.96[EUR][1000 genomes] |
| rs2731101 | 0.96[EUR][1000 genomes] |
| rs57022528 | 0.83[ASN][1000 genomes] |
| rs61227501 | 0.83[ASN][1000 genomes] |
| rs6580674 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv427911 | chr12:48670336-48979396 | Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 35 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
