Variant report

Variant	rs11831039
Chromosome Location	chr12:62389437-62389438
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11830499	1.00[ASN][1000 genomes]
rs11832185	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11837361	1.00[ASN][1000 genomes]
rs11837364	1.00[ASN][1000 genomes]
rs11837421	1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs12302719	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73130983	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7955714	1.00[ASN][1000 genomes]
rs7956690	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7958639	1.00[ASN][1000 genomes]
rs7979256	1.00[ASN][1000 genomes]
rs7979621	1.00[ASN][1000 genomes]
rs9737799	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv899152	chr12:62370229-62390624	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11831039	MIP	cis	parietal	SCAN
rs11831039	R3HDM2	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62386400-62389800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62386400-62390000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr12:62386400-62392600	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr12:62387800-62392600	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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