Variant report

Variant	rs11832384
Chromosome Location	chr12:41369322-41369323
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10506181	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10879452	0.90[ASN][1000 genomes]
rs1372540	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1434686	0.80[ASN][1000 genomes]
rs1442191	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1442194	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17128977	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17128987	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17128997	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1797980	0.80[ASN][1000 genomes]
rs1797982	0.80[ASN][1000 genomes]
rs448780	0.80[ASN][1000 genomes]
rs55927654	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55994689	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56333303	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73111395	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73116958	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73116975	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73116987	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv826346	chr12:41313148-41374833	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv832382	chr12:41359550-41489681	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41353200-41373600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:41363600-41369400	Weak transcription	Colon Smooth Muscle	Colon
3	chr12:41364000-41369600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr12:41366000-41369600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:41366200-41369600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr12:41369200-41370800	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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