Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10506181	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10879452	0.90[ASN][1000 genomes]
rs11832384	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1372540	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1434686	0.80[ASN][1000 genomes]
rs1442194	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17128925	0.89[CHD][hapmap];1.00[MEX][hapmap]
rs17128977	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17128987	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17128997	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1797980	0.80[ASN][1000 genomes]
rs1797982	0.80[ASN][1000 genomes]
rs448780	0.80[ASN][1000 genomes]
rs55927654	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55994689	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56333303	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73111395	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73116958	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73116975	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs73116987	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497867	chr12:41286305-41728650	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv826346	chr12:41313148-41374833	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv832382	chr12:41359550-41489681	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41353200-41373600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr12:41369200-41370800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr12:41369600-41370800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr12:41369600-41370800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr12:41369600-41370800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr12:41369800-41370800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:41369800-41371200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr12:41370000-41370800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr12:41370400-41370800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr12:41370400-41370800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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