Variant report

Variant	rs11833327
Chromosome Location	chr12:87747155-87747156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11830580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11833127	1.00[AMR][1000 genomes]
rs11833186	1.00[AMR][1000 genomes]
rs11833396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11833404	1.00[AMR][1000 genomes]
rs11833982	1.00[AMR][1000 genomes]
rs11835435	1.00[AMR][1000 genomes]
rs11835810	1.00[AMR][1000 genomes]
rs11837886	1.00[AMR][1000 genomes]
rs11838093	1.00[AMR][1000 genomes]
rs2406762	1.00[AMR][1000 genomes]
rs4312139	1.00[AMR][1000 genomes]
rs4420359	1.00[AMR][1000 genomes]
rs56055922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7488103	1.00[AMR][1000 genomes]
rs7955773	1.00[AMR][1000 genomes]
rs7972221	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427918	chr12:87647585-87786660	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87742000-87751800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:87746400-87747200	Enhancers	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links