Variant report

Variant	rs7955773
Chromosome Location	chr12:87820700-87820701
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11830580	1.00[AMR][1000 genomes]
rs11833127	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11833186	1.00[AMR][1000 genomes]
rs11833327	1.00[AMR][1000 genomes]
rs11833396	1.00[AMR][1000 genomes]
rs11833404	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11833982	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11835435	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11835810	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11837886	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11838093	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2406762	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4312139	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4420359	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56055922	1.00[AMR][1000 genomes]
rs7488103	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7972221	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430523	chr12:87757132-87865832	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv430525	chr12:87757132-87905532	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3329221	chr12:87785317-87833393	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv559701	chr12:87801947-87905878	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3350469	chr12:87802235-87844904	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87808600-87822600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr12:87820200-87821000	ZNF genes & repeats	A549	lung
3	chr12:87820200-87821200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:87820200-87821600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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