Variant report

Variant	rs11833771
Chromosome Location	chr12:21473829-21473830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11830939	0.93[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs11830971	0.93[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11832186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11832394	0.93[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11836945	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2199683	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs57236825	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59940564	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61537911	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7298793	1.00[EUR][1000 genomes]
rs7312628	0.80[AFR][1000 genomes]
rs73237235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73237241	0.81[AFR][1000 genomes]
rs7975594	1.00[EUR][1000 genomes]
rs7977483	0.90[LWK][hapmap];0.83[MKK][hapmap];0.91[YRI][hapmap]
rs7977606	1.00[EUR][1000 genomes]
rs7980430	1.00[EUR][1000 genomes]
rs9634094	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21473800-21474000	Enhancers	Brain Substantia Nigra	brain
2	chr12:21473800-21474200	Flanking Active TSS	Brain Hippocampus Middle	brain
3	chr12:21473800-21474400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
4	chr12:21473800-21477800	Active TSS	Brain Angular Gyrus	brain
5	chr12:21473800-21477800	Active TSS	Brain Cingulate Gyrus	brain
6	chr12:21473800-21478200	Active TSS	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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