Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11045959	0.87[ASW][hapmap];0.84[LWK][hapmap];0.80[MKK][hapmap]
rs11830939	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11830971	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11830993	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11832186	0.81[AFR][1000 genomes]
rs11832851	1.00[MEX][hapmap]
rs11833627	0.85[AMR][1000 genomes]
rs11833771	0.93[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11835045	1.00[MEX][hapmap]
rs11836396	1.00[MEX][hapmap]
rs11836945	0.93[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs11838023	1.00[MEX][hapmap]
rs16923608	1.00[MEX][hapmap]
rs16923663	1.00[MEX][hapmap]
rs2199683	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2199688	1.00[MEX][hapmap]
rs59940564	0.81[AFR][1000 genomes]
rs60462043	0.97[AFR][1000 genomes]
rs61552073	0.85[AMR][1000 genomes]
rs7312628	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73237235	0.81[AFR][1000 genomes]
rs73237241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73248969	0.85[AMR][1000 genomes]
rs73250847	0.85[AMR][1000 genomes]
rs7486475	0.85[AMR][1000 genomes]
rs7977483	0.87[ASW][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21478200-21478800	Enhancers	Brain Anterior Caudate	brain
2	chr12:21478200-21478800	Enhancers	Brain Hippocampus Middle	brain
3	chr12:21478400-21478800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr12:21478400-21478800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr12:21478400-21479800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:21478600-21478800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr12:21478600-21478800	Enhancers	Brain Substantia Nigra	brain
8	chr12:21478600-21479000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr12:21478600-21480400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
10	chr12:21478600-21482400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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