Variant report

Variant	rs11836396
Chromosome Location	chr12:21461400-21461401
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11045959	0.92[MKK][hapmap];0.90[AMR][1000 genomes]
rs11830939	1.00[MEX][hapmap]
rs11830971	1.00[MEX][hapmap]
rs11832394	1.00[MEX][hapmap]
rs11832851	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11835045	1.00[MEX][hapmap]
rs11837357	0.80[AMR][1000 genomes]
rs11837359	0.90[AMR][1000 genomes]
rs11838023	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12314183	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs16923608	1.00[MEX][hapmap]
rs16923663	0.90[ASW][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes]
rs2199688	1.00[MEX][hapmap]
rs2417973	0.90[ASW][hapmap];0.82[LWK][hapmap];0.91[AMR][1000 genomes]
rs73235208	0.91[AMR][1000 genomes]
rs73235210	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7977483	1.00[MEX][hapmap];0.81[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21416200-21473600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr12:21460600-21462200	Enhancers	Brain Substantia Nigra	brain
3	chr12:21461000-21462200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr12:21461000-21464400	Weak transcription	Brain Hippocampus Middle	brain
5	chr12:21461000-21467000	Weak transcription	Brain Anterior Caudate	brain
6	chr12:21461000-21473800	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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