Variant report

Variant	rs16923663
Chromosome Location	chr12:21460470-21460471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11045959	0.81[AMR][1000 genomes]
rs11830939	1.00[MEX][hapmap]
rs11830971	1.00[MEX][hapmap]
rs11832394	1.00[MEX][hapmap]
rs11832851	0.90[ASW][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes]
rs11835045	1.00[MEX][hapmap]
rs11836396	0.90[ASW][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes]
rs11837359	0.81[AMR][1000 genomes]
rs11838023	0.90[ASW][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes]
rs12314183	1.00[AMR][1000 genomes]
rs16923608	0.83[ASW][hapmap];1.00[MEX][hapmap]
rs2199688	0.83[ASW][hapmap];1.00[MEX][hapmap]
rs2417973	1.00[ASW][hapmap];0.91[MKK][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73235208	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73235210	0.91[AMR][1000 genomes]
rs7977483	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557735	chr12:21443282-21538957	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:21416200-21473600	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr12:21447600-21460600	Weak transcription	Brain Substantia Nigra	brain
3	chr12:21450800-21460600	Weak transcription	Brain Hippocampus Middle	brain
4	chr12:21451400-21460600	Weak transcription	Brain Angular Gyrus	brain
5	chr12:21460400-21461000	Enhancers	Brain Anterior Caudate	brain
6	chr12:21460400-21461000	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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