Variant report
| Variant | rs11834059 |
|---|---|
| Chromosome Location | chr12:119187517-119187518 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs1851090 | 1.00[EUR][1000 genomes] |
| rs55784945 | 1.00[EUR][1000 genomes] |
| rs56201537 | 1.00[EUR][1000 genomes] |
| rs56385755 | 1.00[EUR][1000 genomes] |
| rs57335032 | 1.00[EUR][1000 genomes] |
| rs57580214 | 1.00[EUR][1000 genomes] |
| rs58126539 | 1.00[EUR][1000 genomes] |
| rs58257597 | 1.00[EUR][1000 genomes] |
| rs58940580 | 1.00[EUR][1000 genomes] |
| rs59299926 | 1.00[EUR][1000 genomes] |
| rs59308806 | 1.00[EUR][1000 genomes] |
| rs60045043 | 1.00[EUR][1000 genomes] |
| rs60987420 | 1.00[EUR][1000 genomes] |
| rs61131582 | 1.00[EUR][1000 genomes] |
| rs7134103 | 1.00[EUR][1000 genomes] |
| rs7134853 | 1.00[EUR][1000 genomes] |
| rs73411673 | 1.00[EUR][1000 genomes] |
| rs73411678 | 1.00[EUR][1000 genomes] |
| rs73411683 | 1.00[EUR][1000 genomes] |
| rs73411691 | 1.00[EUR][1000 genomes] |
| rs73411699 | 1.00[EUR][1000 genomes] |
| rs73411701 | 1.00[EUR][1000 genomes] |
| rs73413403 | 1.00[EUR][1000 genomes] |
| rs73413411 | 1.00[EUR][1000 genomes] |
| rs73413414 | 1.00[EUR][1000 genomes] |
| rs73413417 | 1.00[EUR][1000 genomes] |
| rs7964796 | 1.00[EUR][1000 genomes] |
| rs7973549 | 1.00[EUR][1000 genomes] |
| rs7980252 | 1.00[EUR][1000 genomes] |
| rs7980285 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv930978 | chr12:118866332-119450600 | Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv1039515 | chr12:119085196-119218918 | ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1045363 | chr12:119091734-119219659 | Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv519756 | chr12:119092357-119227242 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:119187400-119188400 | Enhancers | H9 Cell Line | embryonic stem cell |
| 2 | chr12:119187400-119188600 | Enhancers | ES-WA7 Cell Line | embryonic stem cell |
| 3 | chr12:119187400-119189000 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
