Variant report

Variant	rs7973549
Chromosome Location	chr12:119027082-119027083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11834059	1.00[EUR][1000 genomes]
rs1851090	1.00[EUR][1000 genomes]
rs55784945	1.00[EUR][1000 genomes]
rs56201537	1.00[EUR][1000 genomes]
rs56385755	1.00[EUR][1000 genomes]
rs57335032	1.00[EUR][1000 genomes]
rs57580214	1.00[EUR][1000 genomes]
rs58126539	1.00[EUR][1000 genomes]
rs58257597	1.00[EUR][1000 genomes]
rs58940580	1.00[EUR][1000 genomes]
rs59299926	1.00[EUR][1000 genomes]
rs59308806	1.00[EUR][1000 genomes]
rs60045043	1.00[EUR][1000 genomes]
rs60987420	1.00[EUR][1000 genomes]
rs61131582	1.00[EUR][1000 genomes]
rs7134103	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73409634	1.00[EUR][1000 genomes]
rs73411673	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73411678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73411691	1.00[EUR][1000 genomes]
rs73411699	1.00[EUR][1000 genomes]
rs73411701	1.00[EUR][1000 genomes]
rs73413403	1.00[EUR][1000 genomes]
rs73413411	1.00[EUR][1000 genomes]
rs73413414	1.00[EUR][1000 genomes]
rs73413417	1.00[EUR][1000 genomes]
rs73414937	1.00[EUR][1000 genomes]
rs737272	1.00[MEX][hapmap]
rs7964796	1.00[EUR][1000 genomes]
rs7980252	1.00[EUR][1000 genomes]
rs7980285	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930978	chr12:118866332-119450600	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1043906	chr12:118991884-119087146	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119026200-119029800	Enhancers	Fetal Brain Male	brain
2	chr12:119026600-119027200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr12:119026600-119029200	Enhancers	Fetal Brain Female	brain
4	chr12:119026800-119027600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr12:119026800-119028400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:119027000-119027600	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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