Variant report

Variant	rs11834792
Chromosome Location	chr12:45066455-45066456
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10161119	1.00[AMR][1000 genomes]
rs11182540	1.00[AMR][1000 genomes]
rs11836369	1.00[AMR][1000 genomes]
rs12296478	1.00[AMR][1000 genomes]
rs12297768	1.00[AMR][1000 genomes]
rs12298472	1.00[AMR][1000 genomes]
rs12304543	1.00[AMR][1000 genomes]
rs12309120	1.00[AMR][1000 genomes]
rs12313496	1.00[AMR][1000 genomes]
rs7974071	1.00[AMR][1000 genomes]
rs7975163	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3378050	chr12:44963059-45264289	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv430506	chr12:45003342-45072343	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45049400-45069000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:45051800-45081200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr12:45056600-45083800	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr12:45057800-45067200	Weak transcription	Fetal Brain Male	brain
5	chr12:45062400-45081200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr12:45064200-45068600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr12:45064600-45067600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr12:45065000-45116000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr12:45065600-45066800	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr12:45066200-45066600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr12:45066200-45066800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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